Wall clock time and date at job start Mon Mar 30 2020 02:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99803 * 2 1 4 4 H 1.48501 * 109.47092 * 274.98435 * 3 2 1 5 5 H 1.48502 * 109.47185 * 34.98477 * 3 2 1 6 6 H 1.48504 * 109.47190 * 154.98241 * 3 2 1 7 7 C 1.40043 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99741 * 186.12309 * 7 2 1 9 9 C 1.46368 * 120.00209 * 6.12622 * 7 2 1 10 10 O 1.21690 * 120.00109 * 353.82029 * 9 7 2 11 11 N 1.34783 * 120.00341 * 173.81918 * 9 7 2 12 12 C 1.47021 * 125.64670 * 359.97213 * 11 9 7 13 13 C 1.54320 * 107.27038 * 181.09809 * 12 11 9 14 14 C 1.55159 * 102.94478 * 22.19877 * 13 12 11 15 15 H 1.08996 * 111.00602 * 82.60488 * 14 13 12 16 16 C 1.52993 * 111.00494 * 206.42285 * 14 13 12 17 17 C 1.52997 * 109.47376 * 181.81624 * 16 14 13 18 18 O 1.42892 * 109.47553 * 180.02562 * 17 16 14 19 19 C 1.47470 * 125.62924 * 180.02562 * 11 9 7 20 20 H 0.97002 * 119.99951 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.88067 * 61.68406 * 12 11 9 22 22 H 1.08998 * 109.88405 * 300.52281 * 12 11 9 23 23 H 1.08998 * 110.72199 * 263.82774 * 13 12 11 24 24 H 1.09003 * 110.86722 * 140.62985 * 13 12 11 25 25 H 1.09002 * 109.47394 * 61.81408 * 16 14 13 26 26 H 1.08997 * 109.47148 * 301.82102 * 16 14 13 27 27 H 1.09002 * 109.47035 * 59.99565 * 17 16 14 28 28 H 1.09005 * 109.47214 * 300.00066 * 17 16 14 29 29 H 0.96701 * 114.00204 * 180.02562 * 18 17 16 30 30 H 1.08991 * 110.40789 * 37.00532 * 19 11 9 31 31 H 1.09002 * 110.34664 * 274.67023 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4122 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2154 0.1003 9 6 1.2815 -2.4769 -0.1342 10 8 0.0646 -2.4830 -0.1335 11 7 1.9611 -3.6341 -0.2590 12 6 3.4249 -3.7705 -0.2758 13 6 3.7432 -5.2686 -0.4649 14 6 2.4451 -5.8210 -1.1109 15 1 2.4386 -5.6452 -2.1866 16 6 2.2679 -7.3085 -0.8001 17 6 1.0043 -7.8266 -1.4897 18 8 0.8384 -9.2158 -1.1990 19 6 1.3592 -4.9727 -0.4023 20 1 -0.4850 0.8401 -0.0004 21 1 3.8408 -3.4195 0.6687 22 1 3.8413 -3.1957 -1.1029 23 1 3.9298 -5.7476 0.4963 24 1 4.5940 -5.4035 -1.1329 25 1 2.1763 -7.4462 0.2773 26 1 3.1335 -7.8615 -1.1646 27 1 1.0959 -7.6889 -2.5671 28 1 0.1386 -7.2736 -1.1251 29 1 0.0553 -9.6119 -1.6051 30 1 0.4589 -4.9210 -1.0145 31 1 1.1293 -5.3918 0.5773 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158893675.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:37 Heat of formation + Delta-G solvation = -99.771092 kcal Electronic energy + Delta-G solvation = -14257.454141 eV Core-core repulsion = 11731.263060 eV Total energy + Delta-G solvation = -2526.191081 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.73930 -36.96790 -35.73722 -32.59624 -32.30137 -29.25968 -27.64624 -25.81259 -23.33195 -21.53056 -20.03697 -19.11283 -17.36740 -16.61476 -15.67210 -15.45960 -14.84899 -14.24167 -14.00049 -13.52559 -13.11147 -12.79952 -12.20690 -11.89708 -11.79882 -11.40770 -11.21511 -11.07706 -10.85268 -10.73831 -10.38143 -10.32191 -10.25971 -10.12172 -9.89365 -8.85422 -7.63945 -7.16914 -6.21026 -4.64156 3.13479 3.20516 3.24345 4.07552 4.15855 4.54164 4.66091 4.87095 5.01769 5.22647 5.32339 5.41619 5.53401 5.75634 5.78215 5.80323 5.97373 6.08718 6.15551 6.23437 6.41192 6.50117 6.67351 6.69410 7.40723 7.44328 7.57014 8.11424 8.42908 9.01792 9.50498 10.57251 10.76196 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060127 B = 0.006749 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.565903 B = 4148.013936 C = 4534.797217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.570 3.430 10 O -0.578 6.578 11 N -0.647 5.647 12 C 0.121 3.879 13 C -0.126 4.126 14 C -0.103 4.103 15 H 0.080 0.920 16 C -0.104 4.104 17 C 0.072 3.928 18 O -0.579 6.579 19 C 0.119 3.881 20 H 0.268 0.732 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.377 0.623 30 H 0.062 0.938 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 -10.674 -2.930 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.088 0.912 9 C 0.377 3.623 10 O -0.461 6.461 11 N -0.387 5.387 12 C -0.004 4.004 13 C -0.164 4.164 14 C -0.122 4.122 15 H 0.099 0.901 16 C -0.142 4.142 17 C -0.005 4.005 18 O -0.384 6.384 19 C -0.005 4.005 20 H 0.079 0.921 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.223 0.777 30 H 0.080 0.920 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.488 -10.356 -2.567 11.998 hybrid contribution 0.012 0.741 -0.362 0.825 sum 5.500 -9.616 -2.929 11.458 Atomic orbital electron populations 1.70033 1.07119 1.27319 1.35258 1.25735 0.94610 1.00343 0.92592 0.86346 0.80257 0.81401 0.78701 1.19768 1.20406 1.18827 1.20904 0.94132 0.89207 1.53366 0.91216 1.18049 0.86601 0.81279 0.76378 1.90603 1.13908 1.85623 1.55943 1.48724 1.04768 1.05579 1.79623 1.21568 0.84105 0.94145 1.00541 1.22680 0.96891 0.96169 1.00666 1.22333 0.96403 0.93063 1.00391 0.90143 1.21428 0.96894 0.94525 1.01395 1.22282 0.98530 0.81246 0.98480 1.86445 1.50296 1.24427 1.77263 1.21888 0.95698 0.84669 0.98240 0.92079 0.92957 0.92809 0.91225 0.91011 0.91066 0.91312 0.93716 0.93073 0.77660 0.91978 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.34 11.85 55.55 0.66 -22.68 16 2 C 0.09 2.45 5.49 -17.37 -0.10 2.36 16 3 Si 0.91 20.30 29.56 -169.99 -5.03 15.27 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.54 -15.55 9.05 -35.64 -0.32 -15.87 16 8 H 0.07 1.85 7.19 -52.48 -0.38 1.48 16 9 C 0.57 16.84 7.78 -12.99 -0.10 16.74 16 10 O -0.58 -19.30 15.30 5.20 0.08 -19.22 16 11 N -0.65 -15.32 3.33 -172.12 -0.57 -15.89 16 12 C 0.12 2.28 6.06 -3.07 -0.02 2.26 16 13 C -0.13 -1.80 6.42 -24.90 -0.16 -1.96 16 14 C -0.10 -1.52 3.04 -88.45 -0.27 -1.79 16 15 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.10 -1.33 5.09 -26.74 -0.14 -1.47 16 17 C 0.07 0.87 6.92 37.16 0.26 1.13 16 18 O -0.58 -6.82 13.66 -35.23 -0.48 -7.30 16 19 C 0.12 2.35 5.71 -2.48 -0.01 2.33 16 20 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.07 0.92 8.04 -51.93 -0.42 0.51 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.65 7.59 -51.93 -0.39 0.25 16 29 H 0.38 2.68 9.12 45.56 0.42 3.09 16 30 H 0.06 1.31 8.00 -51.93 -0.42 0.89 16 31 H 0.04 0.88 7.96 -51.93 -0.41 0.47 16 LS Contribution 263.66 15.07 3.97 3.97 Total: -1.00 -35.71 263.66 -5.92 -41.63 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -3.69 Total: 0.50 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.86 Total: 3.73 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.09 Total: -38.57 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.40 Total: -26.53 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -35.71 -5.92 -41.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158893675.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.145 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds