Wall clock time and date at job start Mon Mar 30 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86801 * 119.99803 * 2 1 4 4 H 1.48501 * 109.47092 * 274.98435 * 3 2 1 5 5 H 1.48502 * 109.47185 * 34.98477 * 3 2 1 6 6 H 1.48504 * 109.47190 * 154.98241 * 3 2 1 7 7 C 1.40043 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99741 * 186.12309 * 7 2 1 9 9 C 1.46368 * 120.00209 * 6.12622 * 7 2 1 10 10 O 1.21690 * 120.00109 * 353.82029 * 9 7 2 11 11 N 1.34783 * 120.00341 * 173.81918 * 9 7 2 12 12 C 1.47021 * 125.64670 * 359.97213 * 11 9 7 13 13 C 1.54320 * 107.27038 * 181.09809 * 12 11 9 14 14 C 1.55159 * 102.94478 * 22.19877 * 13 12 11 15 15 H 1.08996 * 111.00602 * 82.60488 * 14 13 12 16 16 C 1.52993 * 111.00494 * 206.42285 * 14 13 12 17 17 C 1.52997 * 109.47376 * 181.81624 * 16 14 13 18 18 O 1.42892 * 109.47553 * 180.02562 * 17 16 14 19 19 C 1.47470 * 125.62924 * 180.02562 * 11 9 7 20 20 H 0.97002 * 119.99951 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.88067 * 61.68406 * 12 11 9 22 22 H 1.08998 * 109.88405 * 300.52281 * 12 11 9 23 23 H 1.08998 * 110.72199 * 263.82774 * 13 12 11 24 24 H 1.09003 * 110.86722 * 140.62985 * 13 12 11 25 25 H 1.09002 * 109.47394 * 61.81408 * 16 14 13 26 26 H 1.08997 * 109.47148 * 301.82102 * 16 14 13 27 27 H 1.09002 * 109.47035 * 59.99565 * 17 16 14 28 28 H 1.09005 * 109.47214 * 300.00066 * 17 16 14 29 29 H 0.96701 * 114.00204 * 180.02562 * 18 17 16 30 30 H 1.08991 * 110.40789 * 37.00532 * 19 11 9 31 31 H 1.09002 * 110.34664 * 274.67023 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4122 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2154 0.1003 9 6 1.2815 -2.4769 -0.1342 10 8 0.0646 -2.4830 -0.1335 11 7 1.9611 -3.6341 -0.2590 12 6 3.4249 -3.7705 -0.2758 13 6 3.7432 -5.2686 -0.4649 14 6 2.4451 -5.8210 -1.1109 15 1 2.4386 -5.6452 -2.1866 16 6 2.2679 -7.3085 -0.8001 17 6 1.0043 -7.8266 -1.4897 18 8 0.8384 -9.2158 -1.1990 19 6 1.3592 -4.9727 -0.4023 20 1 -0.4850 0.8401 -0.0004 21 1 3.8408 -3.4195 0.6687 22 1 3.8413 -3.1957 -1.1029 23 1 3.9298 -5.7476 0.4963 24 1 4.5940 -5.4035 -1.1329 25 1 2.1763 -7.4462 0.2773 26 1 3.1335 -7.8615 -1.1646 27 1 1.0959 -7.6889 -2.5671 28 1 0.1386 -7.2736 -1.1251 29 1 0.0553 -9.6119 -1.6051 30 1 0.4589 -4.9210 -1.0145 31 1 1.1293 -5.3918 0.5773 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158893675.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:36 Heat of formation + Delta-G solvation = -128.156848 kcal Electronic energy + Delta-G solvation = -14258.685040 eV Core-core repulsion = 11731.263060 eV Total energy + Delta-G solvation = -2527.421980 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.35037 -38.32744 -37.36498 -34.69720 -33.84315 -30.72526 -29.36180 -27.61800 -24.82556 -22.85323 -21.45886 -20.88423 -18.71757 -18.12131 -17.62458 -16.95251 -16.16259 -16.07986 -15.34800 -15.04656 -14.66629 -14.23759 -13.81755 -13.66889 -13.24103 -12.94910 -12.84308 -12.68163 -12.51321 -12.35171 -12.01836 -11.87279 -11.53911 -11.49250 -10.96274 -10.84582 -9.91908 -9.11552 -8.33874 -6.88590 1.38255 1.39687 1.56158 2.22142 2.41230 2.84839 3.27596 3.52654 3.67440 3.81984 4.06758 4.27893 4.35018 4.41700 4.53207 4.54512 4.75859 4.84780 4.97440 5.04397 5.05350 5.13695 5.26709 5.29391 5.44416 5.63898 6.01683 6.39530 6.83078 6.88062 7.44917 8.41346 8.63233 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060127 B = 0.006749 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.565903 B = 4148.013936 C = 4534.797217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.548 3.452 10 O -0.636 6.636 11 N -0.657 5.657 12 C 0.111 3.889 13 C -0.111 4.111 14 C -0.085 4.085 15 H 0.087 0.913 16 C -0.098 4.098 17 C 0.072 3.928 18 O -0.591 6.591 19 C 0.112 3.888 20 H 0.276 0.724 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.085 0.915 24 H 0.109 0.891 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.396 0.604 30 H 0.037 0.963 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.454 -11.093 -3.420 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.602 4.602 8 H 0.105 0.895 9 C 0.355 3.645 10 O -0.523 6.523 11 N -0.394 5.394 12 C -0.012 4.012 13 C -0.148 4.148 14 C -0.104 4.104 15 H 0.105 0.895 16 C -0.135 4.135 17 C -0.006 4.006 18 O -0.400 6.400 19 C -0.011 4.011 20 H 0.086 0.914 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.127 0.873 25 H 0.084 0.916 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.246 0.754 30 H 0.055 0.945 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.143 -10.845 -3.065 13.904 hybrid contribution -0.838 0.772 -0.201 1.157 sum 7.305 -10.073 -3.266 12.864 Atomic orbital electron populations 1.70202 1.09682 1.29089 1.36297 1.27055 0.95535 1.05091 0.91084 0.84970 0.78920 0.74841 0.79332 1.18564 1.19567 1.17020 1.21401 0.95096 0.89871 1.53849 0.89484 1.18475 0.86308 0.83395 0.76316 1.90540 1.16218 1.87087 1.58490 1.48582 1.07244 1.05593 1.77996 1.21866 0.80907 0.97889 1.00559 1.22678 0.97504 0.92250 1.02398 1.22226 0.94457 0.93593 1.00126 0.89468 1.21355 0.98108 0.92845 1.01227 1.22227 0.97739 0.81449 0.99168 1.86387 1.51742 1.24014 1.77836 1.22088 0.96697 0.83903 0.98412 0.91448 0.93106 0.92696 0.89667 0.87285 0.91626 0.89053 0.92343 0.94591 0.75406 0.94459 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.60 11.85 21.83 0.26 -51.34 16 2 C 0.03 1.55 5.49 85.30 0.47 2.02 16 3 Si 1.00 41.49 29.56 68.60 2.03 43.51 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 7 C -0.57 -33.19 9.05 24.83 0.22 -32.96 16 8 H 0.09 4.61 7.19 -2.91 -0.02 4.59 16 9 C 0.55 33.63 7.78 86.36 0.67 34.31 16 10 O -0.64 -44.80 15.30 -4.32 -0.07 -44.87 16 11 N -0.66 -31.67 3.33 -816.69 -2.72 -34.39 16 12 C 0.11 4.03 6.06 86.73 0.53 4.56 16 13 C -0.11 -2.79 6.42 31.78 0.20 -2.58 16 14 C -0.08 -2.33 3.04 -9.39 -0.03 -2.36 16 15 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 16 C -0.10 -2.22 5.09 30.59 0.16 -2.07 16 17 C 0.07 1.62 6.92 71.98 0.50 2.11 16 18 O -0.59 -12.71 13.66 -148.98 -2.03 -14.74 16 19 C 0.11 4.51 5.71 86.86 0.50 5.01 16 20 H 0.28 15.53 8.29 -92.71 -0.77 14.76 16 21 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 22 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 24 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.59 8.03 -2.39 -0.02 1.57 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.04 0.90 7.59 -2.38 -0.02 0.89 16 29 H 0.40 4.88 9.12 -74.06 -0.68 4.21 16 30 H 0.04 1.65 8.00 -2.39 -0.02 1.63 16 31 H 0.04 1.68 7.96 -2.39 -0.02 1.66 16 Total: -1.00 -81.14 263.66 1.13 -80.01 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.44 Total: 13.78 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 3.22 Total: 8.03 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.46 Total: -85.73 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -2.10 Total: -59.61 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -81.14 1.13 -80.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158893675.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.143 kcal (2) G-P(sol) polarization free energy of solvation -81.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds