Wall clock time and date at job start Mon Mar 30 2020 02:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86797 * 119.99924 * 2 1 4 4 H 1.48497 * 109.47405 * 274.98588 * 3 2 1 5 5 H 1.48501 * 109.47139 * 34.98777 * 3 2 1 6 6 H 1.48503 * 109.46977 * 154.98238 * 3 2 1 7 7 C 1.40052 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99854 * 186.12513 * 7 2 1 9 9 C 1.46379 * 120.00308 * 6.12789 * 7 2 1 10 10 O 1.21690 * 119.99491 * 353.83600 * 9 7 2 11 11 N 1.34771 * 119.99903 * 173.83190 * 9 7 2 12 12 C 1.47021 * 125.64820 * 0.04645 * 11 9 7 13 13 C 1.54332 * 107.26531 * 178.90126 * 12 11 9 14 14 C 1.55155 * 102.94432 * 337.80440 * 13 12 11 15 15 H 1.09001 * 111.00387 * 277.42795 * 14 13 12 16 16 C 1.52994 * 111.00267 * 153.57906 * 14 13 12 17 17 C 1.53003 * 109.47006 * 181.34811 * 16 14 13 18 18 O 1.42906 * 109.46969 * 179.97438 * 17 16 14 19 19 C 1.47426 * 125.64497 * 179.97438 * 11 9 7 20 20 H 0.96997 * 120.00097 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.88445 * 298.31456 * 12 11 9 22 22 H 1.08998 * 109.88368 * 59.48706 * 12 11 9 23 23 H 1.09005 * 110.71230 * 219.43879 * 13 12 11 24 24 H 1.08997 * 110.71790 * 96.17543 * 13 12 11 25 25 H 1.09000 * 109.47129 * 301.34747 * 16 14 13 26 26 H 1.09001 * 109.47555 * 61.34691 * 16 14 13 27 27 H 1.08992 * 109.47274 * 299.99637 * 17 16 14 28 28 H 1.09001 * 109.47072 * 60.00135 * 17 16 14 29 29 H 0.96694 * 113.99918 * 180.02562 * 18 17 16 30 30 H 1.08998 * 110.36964 * 85.33031 * 19 11 9 31 31 H 1.08999 * 110.46215 * 323.05245 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6199 0.8028 6 1 3.5870 1.4120 0.5921 7 6 2.0070 -1.2129 -0.0005 8 1 3.0824 -1.2156 0.0993 9 6 1.2814 -2.4769 -0.1364 10 8 0.0645 -2.4829 -0.1361 11 7 1.9610 -3.6339 -0.2620 12 6 3.4248 -3.7705 -0.2770 13 6 3.7431 -5.2746 -0.4118 14 6 2.4460 -5.9519 0.1039 15 1 2.4410 -6.0087 1.1925 16 6 2.2680 -7.3392 -0.5161 17 6 0.9642 -7.9602 -0.0107 18 8 0.7976 -9.2558 -0.5904 19 6 1.3597 -4.9723 -0.4055 20 1 -0.4850 0.8400 0.0004 21 1 3.8392 -3.2265 -1.1257 22 1 3.8427 -3.3850 0.6529 23 1 4.5944 -5.5459 0.2127 24 1 3.9280 -5.5379 -1.4532 25 1 2.2309 -7.2499 -1.6018 26 1 3.1070 -7.9745 -0.2323 27 1 1.0012 -8.0496 1.0749 28 1 0.1251 -7.3250 -0.2946 29 1 -0.0104 -9.7094 -0.3140 30 1 1.1278 -5.1739 -1.4512 31 1 0.4599 -5.0532 0.2043 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158893825.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:39 Heat of formation + Delta-G solvation = -99.733918 kcal Electronic energy + Delta-G solvation = -14262.233520 eV Core-core repulsion = 11736.044050 eV Total energy + Delta-G solvation = -2526.189469 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74968 -36.96329 -35.73714 -32.59626 -32.30275 -29.26797 -27.63357 -25.80677 -23.36322 -21.52025 -20.02923 -19.10496 -17.36975 -16.61034 -15.69744 -15.45768 -14.83485 -14.24255 -13.99264 -13.52422 -13.12334 -12.80629 -12.18239 -11.90520 -11.79945 -11.41930 -11.21961 -11.07480 -10.85041 -10.73893 -10.37841 -10.30717 -10.26873 -10.12502 -9.89214 -8.85289 -7.63982 -7.17056 -6.21062 -4.64179 3.13585 3.20589 3.24313 4.07744 4.15917 4.54455 4.65522 4.87692 5.01559 5.22558 5.32829 5.42016 5.53927 5.75745 5.78263 5.79892 5.97003 6.08804 6.15342 6.23359 6.41136 6.49954 6.67145 6.69360 7.40599 7.44292 7.57388 8.11402 8.42920 9.01763 9.50386 10.57212 10.76150 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060698 B = 0.006759 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.187219 B = 4141.919181 C = 4540.897628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.570 3.430 10 O -0.578 6.578 11 N -0.646 5.646 12 C 0.121 3.879 13 C -0.126 4.126 14 C -0.103 4.103 15 H 0.080 0.920 16 C -0.104 4.104 17 C 0.072 3.928 18 O -0.579 6.579 19 C 0.119 3.881 20 H 0.268 0.732 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.377 0.623 30 H 0.045 0.955 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 -10.982 0.334 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.576 4.576 8 H 0.088 0.912 9 C 0.377 3.623 10 O -0.461 6.461 11 N -0.387 5.387 12 C -0.004 4.004 13 C -0.164 4.164 14 C -0.122 4.122 15 H 0.099 0.901 16 C -0.142 4.142 17 C -0.006 4.006 18 O -0.384 6.384 19 C -0.005 4.005 20 H 0.079 0.921 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.223 0.777 30 H 0.063 0.937 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.446 -10.608 0.068 11.924 hybrid contribution -0.006 0.683 0.281 0.739 sum 5.440 -9.924 0.350 11.323 Atomic orbital electron populations 1.70030 1.07121 1.27325 1.35250 1.25737 0.94610 1.00346 0.92591 0.86344 0.80243 0.81393 0.78717 1.19756 1.20413 1.18833 1.20906 0.94130 0.89212 1.53367 0.91216 1.18049 0.86602 0.81303 0.76357 1.90603 1.13908 1.85573 1.55995 1.48707 1.04777 1.05609 1.79574 1.21575 0.84100 0.94105 1.00598 1.22688 0.96899 0.95610 1.01213 1.22327 0.96417 0.93166 1.00297 0.90147 1.21426 0.96543 0.94949 1.01297 1.22286 0.98407 0.83534 0.96340 1.86445 1.47173 1.31675 1.73153 1.21862 0.95694 0.83905 0.99042 0.92076 0.92847 0.92913 0.91015 0.91188 0.91081 0.91318 0.93704 0.93036 0.77658 0.93703 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.34 11.85 55.55 0.66 -22.68 16 2 C 0.09 2.45 5.49 -17.36 -0.10 2.36 16 3 Si 0.91 20.30 29.56 -169.99 -5.03 15.28 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.54 -15.55 9.05 -35.63 -0.32 -15.87 16 8 H 0.07 1.85 7.17 -52.49 -0.38 1.48 16 9 C 0.57 16.84 7.78 -12.99 -0.10 16.74 16 10 O -0.58 -19.30 15.30 5.20 0.08 -19.22 16 11 N -0.65 -15.31 3.33 -172.19 -0.57 -15.88 16 12 C 0.12 2.27 6.07 -3.06 -0.02 2.25 16 13 C -0.13 -1.80 6.42 -24.89 -0.16 -1.96 16 14 C -0.10 -1.52 3.07 -88.49 -0.27 -1.79 16 15 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.10 -1.33 5.10 -26.73 -0.14 -1.47 16 17 C 0.07 0.87 6.90 37.16 0.26 1.13 16 18 O -0.58 -6.85 13.66 -35.23 -0.48 -7.33 16 19 C 0.12 2.34 5.57 -2.54 -0.01 2.33 16 20 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.05 0.99 8.12 -51.93 -0.42 0.56 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 25 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.66 7.45 -51.93 -0.39 0.27 16 29 H 0.38 2.70 9.12 45.56 0.42 3.11 16 30 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 31 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 LS Contribution 263.43 15.07 3.97 3.97 Total: -1.00 -35.70 263.43 -5.92 -41.62 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.68 Total: 0.52 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -0.86 Total: 3.72 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.09 Total: -38.56 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.40 Total: -26.55 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -35.70 -5.92 -41.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158893825.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.115 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds