Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.87196 * 2 1 4 4 C 1.54317 * 109.88150 * 121.01628 * 2 1 3 5 5 H 1.08997 * 110.72379 * 215.58806 * 4 2 1 6 6 O 1.42904 * 110.72283 * 338.86282 * 4 2 1 7 7 C 1.55164 * 102.93868 * 97.22277 * 4 2 1 8 8 C 1.54905 * 101.58194 * 35.50600 * 7 4 2 9 9 N 1.47016 * 109.87966 * 238.82636 * 2 1 3 10 10 C 1.34786 * 125.65086 * 59.55948 * 9 2 1 11 11 O 1.21686 * 119.99660 * 0.02562 * 10 9 2 12 12 C 1.46369 * 120.00124 * 179.97438 * 10 9 2 13 13 H 1.08005 * 119.99854 * 353.62749 * 12 10 9 14 14 C 1.40044 * 119.99890 * 173.61747 * 12 10 9 15 15 N 1.30669 * 120.00533 * 6.04715 * 14 12 10 16 16 Si 1.86805 * 120.00018 * 186.04215 * 14 12 10 17 17 H 1.48505 * 109.46905 * 94.98906 * 16 14 12 18 18 H 1.48501 * 109.47612 * 214.98810 * 16 14 12 19 19 H 1.48496 * 109.47361 * 334.99211 * 16 14 12 20 20 H 1.09002 * 109.47117 * 298.98587 * 1 2 3 21 21 H 1.09006 * 109.47362 * 58.98182 * 1 2 3 22 22 H 1.09001 * 109.47642 * 178.98393 * 1 2 3 23 23 H 1.09006 * 109.47136 * 181.01173 * 3 2 1 24 24 H 1.09002 * 109.47684 * 301.01619 * 3 2 1 25 25 H 1.09000 * 109.47180 * 61.02160 * 3 2 1 26 26 H 0.96699 * 113.99950 * 179.97438 * 6 4 2 27 27 H 1.09004 * 110.99854 * 153.57444 * 7 4 2 28 28 H 1.08994 * 111.00560 * 277.42301 * 7 4 2 29 29 H 1.09004 * 110.36425 * 204.15345 * 8 7 4 30 30 H 1.09001 * 110.46667 * 81.86901 * 8 7 4 31 31 H 0.96993 * 120.00745 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 2.9656 -0.2810 1.6186 6 8 1.0544 -0.7982 2.2629 7 6 2.3517 -2.1686 0.6952 8 6 2.8568 -1.8508 -0.7343 9 7 2.0299 -0.7157 -1.1829 10 6 1.7752 -0.3878 -2.4652 11 8 1.0768 0.5756 -2.7197 12 6 2.3396 -1.1900 -3.5517 13 1 3.0418 -1.9803 -3.3309 14 6 1.9690 -0.9327 -4.8775 15 7 1.2133 0.0960 -5.1569 16 14 2.5551 -2.0602 -6.2467 17 1 1.5140 -3.0816 -6.5266 18 1 2.8066 -1.2609 -7.4727 19 1 3.8105 -2.7347 -5.8293 20 1 -0.3633 0.4980 0.8990 21 1 -0.3634 0.5296 -0.8807 22 1 -0.3634 -1.0275 -0.0182 23 1 3.1400 1.4313 -0.0181 24 1 1.6756 1.9607 -0.8807 25 1 1.7053 1.9498 0.8990 26 1 1.3341 -1.2583 3.0661 27 1 3.1269 -2.6601 1.2832 28 1 1.4451 -2.7727 0.6641 29 1 2.7087 -2.7100 -1.3886 30 1 3.9093 -1.5682 -0.7126 31 1 0.9569 0.2744 -6.0751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170182214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = -87.276837 kcal Electronic energy + Delta-G solvation = -15082.983110 eV Core-core repulsion = 12557.333820 eV Total energy + Delta-G solvation = -2525.649290 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34397 -36.48908 -34.63640 -32.54977 -31.78541 -29.59847 -26.53360 -26.06012 -24.42672 -21.86141 -20.60448 -17.95487 -17.12956 -16.41092 -15.47638 -14.61425 -14.31309 -14.08028 -13.56580 -13.31159 -12.76171 -12.46772 -12.18715 -11.79778 -11.41674 -11.24592 -11.14664 -11.10427 -10.84669 -10.65794 -10.47863 -10.33781 -10.09883 -9.87096 -9.56797 -8.83994 -7.53057 -7.17555 -6.19101 -4.62885 3.13582 3.20758 3.24023 4.03711 4.29946 4.57908 4.65408 5.00851 5.15494 5.32324 5.69106 5.76834 5.87514 5.89157 5.97810 6.21158 6.32397 6.41362 6.54862 6.58829 6.63292 6.73899 7.01849 7.18413 7.44432 7.46470 7.84132 8.14261 8.44658 9.02995 9.53005 10.59349 10.78786 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048288 B = 0.009717 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.715828 B = 2880.889480 C = 3217.616270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.175 3.825 3 C -0.150 4.150 4 C 0.097 3.903 5 H 0.064 0.936 6 O -0.555 6.555 7 C -0.167 4.167 8 C 0.119 3.881 9 N -0.636 5.636 10 C 0.576 3.424 11 O -0.569 6.569 12 C -0.541 4.541 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.767 5.767 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.265 1.265 20 H 0.052 0.948 21 H 0.069 0.931 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.370 0.630 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -4.237 10.347 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.089 3.911 3 C -0.208 4.208 4 C 0.037 3.963 5 H 0.082 0.918 6 O -0.359 6.359 7 C -0.205 4.205 8 C -0.006 4.006 9 N -0.376 5.376 10 C 0.382 3.618 11 O -0.451 6.451 12 C -0.578 4.578 13 H 0.087 0.913 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.189 1.189 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.067 0.933 26 H 0.216 0.784 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.532 -3.217 9.496 10.341 hybrid contribution 0.775 -1.049 -0.210 1.321 sum 3.307 -4.265 9.287 10.741 Atomic orbital electron populations 1.21820 0.94604 1.01374 1.01533 1.20428 0.94714 0.91433 0.84520 1.22114 1.00093 0.96364 1.02228 1.22895 0.89902 0.95159 0.88299 0.91771 1.86568 1.41533 1.80290 1.27483 1.23498 1.01774 0.97495 0.97774 1.21805 0.94337 0.91490 0.92983 1.48830 1.54117 1.30007 1.04674 1.17969 0.80566 0.84623 0.78603 1.90579 1.42480 1.30437 1.81569 1.20889 1.28381 1.18513 0.89993 0.91335 1.25702 0.93596 0.94506 0.99369 1.70016 1.26959 1.22944 1.19652 0.86378 0.79657 0.80478 0.80376 1.19820 1.20439 1.18901 0.92933 0.91217 0.93650 0.93514 0.90481 0.93286 0.78381 0.91072 0.90316 0.90927 0.93470 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 7.78 37.16 0.29 -2.57 16 2 C 0.18 3.57 0.82 -130.85 -0.11 3.46 16 3 C -0.15 -2.98 8.41 37.16 0.31 -2.67 16 4 C 0.10 1.52 3.72 -24.90 -0.09 1.42 16 5 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 6 O -0.55 -7.84 11.77 -35.23 -0.41 -8.26 16 7 C -0.17 -2.46 6.81 -24.58 -0.17 -2.63 16 8 C 0.12 2.21 6.48 -2.53 -0.02 2.20 16 9 N -0.64 -14.81 2.82 -157.45 -0.44 -15.25 16 10 C 0.58 16.51 7.35 -12.99 -0.10 16.41 16 11 O -0.57 -18.17 12.67 5.20 0.07 -18.10 16 12 C -0.54 -15.34 8.93 -35.64 -0.32 -15.66 16 13 H 0.07 1.79 6.75 -52.48 -0.35 1.44 16 14 C 0.09 2.46 5.49 -17.37 -0.10 2.36 16 15 N -0.77 -22.97 11.85 55.55 0.66 -22.31 16 16 Si 0.91 20.21 29.56 -169.99 -5.03 15.18 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 20 H 0.05 1.00 7.49 -51.93 -0.39 0.61 16 21 H 0.07 1.70 6.77 -51.93 -0.35 1.35 16 22 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.08 1.80 6.90 -51.93 -0.36 1.44 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.37 3.28 9.12 45.56 0.42 3.70 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.38 7.24 -51.93 -0.38 1.00 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 LS Contribution 255.06 15.07 3.84 3.84 Total: -1.00 -34.04 255.06 -5.10 -39.14 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.49 Total: 3.44 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -0.29 Total: 2.32 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.21 Total: -37.57 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.35 Total: -26.36 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.04 -5.10 -39.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.134 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds