Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.87196 * 2 1 4 4 C 1.54317 * 109.88150 * 121.01628 * 2 1 3 5 5 H 1.08997 * 110.72379 * 215.58806 * 4 2 1 6 6 O 1.42904 * 110.72283 * 338.86282 * 4 2 1 7 7 C 1.55164 * 102.93868 * 97.22277 * 4 2 1 8 8 C 1.54905 * 101.58194 * 35.50600 * 7 4 2 9 9 N 1.47016 * 109.87966 * 238.82636 * 2 1 3 10 10 C 1.34786 * 125.65086 * 59.55948 * 9 2 1 11 11 O 1.21686 * 119.99660 * 0.02562 * 10 9 2 12 12 C 1.46369 * 120.00124 * 179.97438 * 10 9 2 13 13 H 1.08005 * 119.99854 * 353.62749 * 12 10 9 14 14 C 1.40044 * 119.99890 * 173.61747 * 12 10 9 15 15 N 1.30669 * 120.00533 * 6.04715 * 14 12 10 16 16 Si 1.86805 * 120.00018 * 186.04215 * 14 12 10 17 17 H 1.48505 * 109.46905 * 94.98906 * 16 14 12 18 18 H 1.48501 * 109.47612 * 214.98810 * 16 14 12 19 19 H 1.48496 * 109.47361 * 334.99211 * 16 14 12 20 20 H 1.09002 * 109.47117 * 298.98587 * 1 2 3 21 21 H 1.09006 * 109.47362 * 58.98182 * 1 2 3 22 22 H 1.09001 * 109.47642 * 178.98393 * 1 2 3 23 23 H 1.09006 * 109.47136 * 181.01173 * 3 2 1 24 24 H 1.09002 * 109.47684 * 301.01619 * 3 2 1 25 25 H 1.09000 * 109.47180 * 61.02160 * 3 2 1 26 26 H 0.96699 * 113.99950 * 179.97438 * 6 4 2 27 27 H 1.09004 * 110.99854 * 153.57444 * 7 4 2 28 28 H 1.08994 * 111.00560 * 277.42301 * 7 4 2 29 29 H 1.09004 * 110.36425 * 204.15345 * 8 7 4 30 30 H 1.09001 * 110.46667 * 81.86901 * 8 7 4 31 31 H 0.96993 * 120.00745 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 2.9656 -0.2810 1.6186 6 8 1.0544 -0.7982 2.2629 7 6 2.3517 -2.1686 0.6952 8 6 2.8568 -1.8508 -0.7343 9 7 2.0299 -0.7157 -1.1829 10 6 1.7752 -0.3878 -2.4652 11 8 1.0768 0.5756 -2.7197 12 6 2.3396 -1.1900 -3.5517 13 1 3.0418 -1.9803 -3.3309 14 6 1.9690 -0.9327 -4.8775 15 7 1.2133 0.0960 -5.1569 16 14 2.5551 -2.0602 -6.2467 17 1 1.5140 -3.0816 -6.5266 18 1 2.8066 -1.2609 -7.4727 19 1 3.8105 -2.7347 -5.8293 20 1 -0.3633 0.4980 0.8990 21 1 -0.3634 0.5296 -0.8807 22 1 -0.3634 -1.0275 -0.0182 23 1 3.1400 1.4313 -0.0181 24 1 1.6756 1.9607 -0.8807 25 1 1.7053 1.9498 0.8990 26 1 1.3341 -1.2583 3.0661 27 1 3.1269 -2.6601 1.2832 28 1 1.4451 -2.7727 0.6641 29 1 2.7087 -2.7100 -1.3886 30 1 3.9093 -1.5682 -0.7126 31 1 0.9569 0.2744 -6.0751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170182214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = -114.152077 kcal Electronic energy + Delta-G solvation = -15084.148508 eV Core-core repulsion = 12557.333820 eV Total energy + Delta-G solvation = -2526.814688 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91474 -38.25482 -36.17597 -34.64457 -33.41066 -31.22350 -28.21742 -28.15299 -25.86976 -23.52405 -22.19290 -19.74807 -18.38496 -18.20453 -17.48823 -16.21609 -16.02992 -15.62296 -15.07455 -14.85323 -14.35940 -14.30283 -13.71180 -13.62106 -13.27840 -12.94988 -12.75917 -12.61125 -12.56782 -12.35716 -12.22574 -12.02881 -11.88825 -11.29648 -10.92900 -10.75713 -9.70853 -9.05226 -8.28520 -6.82942 1.38062 1.39506 1.54997 2.21896 2.47520 2.74105 3.34686 3.58503 3.72843 3.82792 4.11142 4.27468 4.34003 4.56610 4.67397 4.76414 4.80224 4.90705 4.97888 5.00507 5.05842 5.28980 5.32992 5.36568 5.46783 5.70984 6.09331 6.48725 6.88058 7.02485 7.54095 8.50667 8.69726 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048288 B = 0.009717 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.715828 B = 2880.889480 C = 3217.616270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.156 3.844 3 C -0.142 4.142 4 C 0.114 3.886 5 H 0.092 0.908 6 O -0.566 6.566 7 C -0.149 4.149 8 C 0.106 3.894 9 N -0.644 5.644 10 C 0.558 3.442 11 O -0.619 6.619 12 C -0.569 4.569 13 H 0.085 0.915 14 C 0.029 3.971 15 N -0.822 5.822 16 Si 0.995 3.005 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.247 1.247 20 H 0.073 0.927 21 H 0.022 0.978 22 H 0.039 0.961 23 H 0.056 0.944 24 H 0.028 0.972 25 H 0.077 0.923 26 H 0.398 0.602 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -6.278 12.020 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.070 3.930 3 C -0.201 4.201 4 C 0.055 3.945 5 H 0.110 0.890 6 O -0.374 6.374 7 C -0.187 4.187 8 C -0.017 4.017 9 N -0.382 5.382 10 C 0.364 3.636 11 O -0.505 6.505 12 C -0.605 4.605 13 H 0.103 0.897 14 C -0.186 4.186 15 N -0.451 5.451 16 Si 0.815 3.185 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.170 1.170 20 H 0.092 0.908 21 H 0.041 0.959 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.096 0.904 26 H 0.249 0.751 27 H 0.138 0.862 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.274 -5.298 11.251 13.150 hybrid contribution 0.211 -0.384 -0.618 0.758 sum 4.485 -5.682 10.633 12.863 Atomic orbital electron populations 1.21678 0.95917 1.00373 1.00210 1.20764 0.93933 0.92208 0.86091 1.22018 1.00518 0.96231 1.01295 1.22614 0.90457 0.94768 0.86684 0.89001 1.86500 1.41447 1.80967 1.28466 1.23450 1.02836 0.97222 0.95223 1.22120 0.94624 0.89544 0.95398 1.48619 1.54025 1.31405 1.04158 1.18295 0.80327 0.84215 0.80775 1.90536 1.44402 1.32302 1.83236 1.21396 1.29112 1.19083 0.90916 0.89689 1.26958 0.93167 0.96030 1.02434 1.70191 1.28779 1.25477 1.20700 0.85047 0.79681 0.77806 0.76013 1.18922 1.19725 1.17032 0.90827 0.95925 0.94225 0.92521 0.95276 0.90410 0.75134 0.86224 0.90985 0.91850 0.91933 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 7.78 71.98 0.56 -4.76 16 2 C 0.16 6.23 0.82 3.95 0.00 6.23 16 3 C -0.14 -5.67 8.41 71.98 0.61 -5.06 16 4 C 0.11 3.14 3.72 31.78 0.12 3.25 16 5 H 0.09 2.09 7.85 -2.39 -0.02 2.08 16 6 O -0.57 -13.55 11.77 -148.98 -1.75 -15.31 16 7 C -0.15 -3.79 6.81 31.99 0.22 -3.57 16 8 C 0.11 3.76 6.48 86.85 0.56 4.32 16 9 N -0.64 -30.18 2.82 -770.27 -2.17 -32.35 16 10 C 0.56 33.24 7.35 86.36 0.63 33.87 16 11 O -0.62 -42.04 12.67 -4.30 -0.05 -42.09 16 12 C -0.57 -32.91 8.93 24.83 0.22 -32.69 16 13 H 0.09 4.45 6.75 -2.91 -0.02 4.43 16 14 C 0.03 1.64 5.49 85.30 0.47 2.11 16 15 N -0.82 -51.26 11.85 21.83 0.26 -51.00 16 16 Si 1.00 41.69 29.56 68.60 2.03 43.72 16 17 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 18 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 19 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 20 H 0.07 2.78 7.49 -2.39 -0.02 2.76 16 21 H 0.02 1.15 6.77 -2.38 -0.02 1.13 16 22 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 24 H 0.03 1.41 6.90 -2.39 -0.02 1.39 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.40 4.90 9.12 -74.06 -0.68 4.23 16 27 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 2.33 7.24 -2.38 -0.02 2.31 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.27 15.45 8.29 -92.71 -0.77 14.69 16 Total: -1.00 -79.35 255.06 2.15 -77.20 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.45 Total: 16.12 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 3.39 Total: 3.71 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.92 Total: -83.35 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -1.81 Total: -57.40 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -79.35 2.15 -77.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170182214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.952 kcal (2) G-P(sol) polarization free energy of solvation -79.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds