Wall clock time and date at job start Mon Mar 30 2020 02:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 F 1.39905 * 109.47051 * 119.99858 * 2 1 3 5 5 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 6 6 N 1.46500 * 109.47520 * 304.99917 * 5 2 1 7 7 N 1.40452 * 127.01516 * 269.68772 * 6 5 2 8 8 C 1.31398 * 107.18037 * 179.88857 * 7 6 5 9 9 N 1.32232 * 109.68450 * 0.37803 * 8 7 6 10 10 C 1.33064 * 109.79571 * 359.75525 * 9 8 7 11 11 C 1.40373 * 126.31254 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99965 * 179.97438 * 11 10 9 13 13 C 1.40265 * 120.00269 * 359.97438 * 11 10 9 14 14 N 1.30646 * 119.99861 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00110 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47261 * 89.99952 * 15 13 11 17 17 H 1.48499 * 109.47241 * 209.99947 * 15 13 11 18 18 H 1.48505 * 109.47367 * 330.00203 * 15 13 11 19 19 H 1.08995 * 109.47208 * 299.99391 * 1 2 3 20 20 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 21 21 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 24 24 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 25 25 H 1.09004 * 109.47346 * 65.00062 * 5 2 1 26 26 H 1.09002 * 109.47196 * 184.99837 * 5 2 1 27 27 H 1.08003 * 125.16121 * 180.11692 * 8 7 6 28 28 H 0.96996 * 120.00134 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 7 1.4559 -2.0634 -1.3110 7 7 1.9880 -3.2430 -0.7650 8 6 1.1485 -4.2139 -1.0462 9 7 0.1283 -3.7344 -1.7375 10 6 0.2820 -2.4251 -1.9181 11 6 -0.5966 -1.5717 -2.6038 12 1 -0.3705 -0.5190 -2.6890 13 6 -1.7683 -2.0860 -3.1783 14 7 -2.0422 -3.3592 -3.0748 15 14 -2.9372 -0.9504 -4.0912 16 1 -2.5548 -0.8952 -5.5251 17 1 -4.3246 -1.4656 -3.9685 18 1 -2.8616 0.4123 -3.5060 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.7517 -0.1584 -2.1370 26 1 3.1264 -0.7995 -1.2056 27 1 1.2747 -5.2477 -0.7601 28 1 -2.8522 -3.7150 -3.4723 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212983993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:02 Heat of formation + Delta-G solvation = 21.786222 kcal Electronic energy + Delta-G solvation = -14648.823155 eV Core-core repulsion = 12036.735640 eV Total energy + Delta-G solvation = -2612.087515 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -47.04244 -39.67823 -35.00271 -33.60123 -30.98863 -29.48652 -27.10999 -26.39785 -25.12400 -20.68252 -20.21156 -19.31177 -16.87908 -15.97581 -15.38960 -15.12509 -14.81504 -14.09530 -13.40366 -13.09598 -12.79142 -12.52451 -12.08972 -11.94837 -11.67459 -11.57615 -11.54498 -11.29822 -10.73354 -10.50433 -10.36484 -10.29887 -9.72719 -9.44916 -8.00451 -7.77706 -7.72746 -6.60798 -4.68933 2.92396 3.05548 3.08071 3.47022 3.82160 4.04785 4.61666 4.95343 4.97902 5.12613 5.24890 5.51554 5.60027 5.79867 5.98424 6.04547 6.09980 6.15182 6.26876 6.62671 6.84107 6.86452 7.15901 7.51657 7.93874 8.31208 8.45710 8.73367 9.08641 10.22736 10.36001 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.030030 B = 0.013025 C = 0.009838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.163346 B = 2149.135135 C = 2845.337327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 C -0.168 4.168 4 F -0.207 7.207 5 C 0.140 3.860 6 N -0.452 5.452 7 N -0.409 5.409 8 C 0.184 3.816 9 N -0.565 5.565 10 C 0.408 3.592 11 C -0.450 4.450 12 H 0.085 0.915 13 C 0.082 3.918 14 N -0.726 5.726 15 Si 0.912 3.088 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.262 1.262 19 H 0.052 0.948 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.178 0.822 28 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.639 8.367 0.952 8.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.078 3.922 3 C -0.226 4.226 4 F -0.188 7.188 5 C 0.014 3.986 6 N -0.246 5.246 7 N -0.241 5.241 8 C -0.120 4.120 9 N -0.300 5.300 10 C 0.161 3.839 11 C -0.491 4.491 12 H 0.103 0.897 13 C -0.145 4.145 14 N -0.350 5.350 15 Si 0.736 3.264 16 H -0.194 1.194 17 H -0.200 1.200 18 H -0.186 1.186 19 H 0.071 0.929 20 H 0.097 0.903 21 H 0.099 0.901 22 H 0.083 0.917 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.195 0.805 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.960 7.883 1.243 8.217 hybrid contribution -0.550 0.597 -0.381 0.896 sum 1.409 8.480 0.862 8.639 Atomic orbital electron populations 1.22405 0.92725 1.05009 1.02266 1.21470 0.95948 0.91256 0.83575 1.22319 1.01966 0.94945 1.03402 1.92848 1.90210 1.83045 1.52661 1.21596 0.98419 0.81725 0.96876 1.50158 1.20080 1.05203 1.49204 1.77795 1.25177 0.91831 1.29344 1.25420 0.91058 0.98597 0.96906 1.71445 1.25256 1.06868 1.26388 1.21019 0.83610 0.89996 0.89307 1.18359 1.03655 0.94635 1.32416 0.89707 1.25819 0.98021 0.95334 0.95280 1.69987 1.21947 1.12670 1.30387 0.86263 0.79302 0.80775 0.80094 1.19401 1.20050 1.18557 0.92898 0.90277 0.90105 0.91697 0.90591 0.91521 0.88855 0.90289 0.80545 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 7.59 37.16 0.28 -2.81 15 2 C 0.10 1.74 1.47 -90.62 -0.13 1.61 15 3 C -0.17 -2.19 8.93 37.16 0.33 -1.86 15 4 F -0.21 -4.37 16.79 2.25 0.04 -4.33 15 5 C 0.14 2.75 5.58 -4.04 -0.02 2.72 15 6 N -0.45 -11.24 3.30 -60.45 -0.20 -11.44 15 7 N -0.41 -10.74 12.71 29.22 0.37 -10.37 15 8 C 0.18 4.80 12.97 -92.12 -1.20 3.61 15 9 N -0.57 -16.17 9.40 -13.96 -0.13 -16.30 15 10 C 0.41 11.04 6.05 -155.88 -0.94 10.10 15 11 C -0.45 -11.30 7.66 -38.02 -0.29 -11.60 15 12 H 0.08 1.91 6.17 -52.49 -0.32 1.59 15 13 C 0.08 2.02 5.50 -17.29 -0.10 1.93 15 14 N -0.73 -19.22 11.93 55.56 0.66 -18.56 15 15 Si 0.91 17.78 29.56 -169.99 -5.03 12.75 15 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 17 H -0.28 -5.33 7.11 56.52 0.40 -4.92 15 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.08 1.36 6.94 -51.93 -0.36 1.00 15 21 H 0.08 1.86 6.17 -51.93 -0.32 1.54 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.09 1.63 7.46 -51.93 -0.39 1.25 15 26 H 0.08 1.47 8.14 -51.93 -0.42 1.04 15 27 H 0.18 3.90 8.06 -52.48 -0.42 3.48 15 28 H 0.28 6.62 8.29 -40.82 -0.34 6.28 15 LS Contribution 244.56 15.07 3.69 3.69 Total: -1.00 -31.56 244.56 -5.73 -37.28 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.06 Total: 3.57 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.07 Total: 3.70 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.70 Total: -56.67 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.04 Total: -4.33 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.56 -5.73 -37.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212983993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.070 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds