Wall clock time and date at job start Mon Mar 30 2020 02:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 F 1.39905 * 109.47051 * 119.99858 * 2 1 3 5 5 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 6 6 N 1.46500 * 109.47520 * 304.99917 * 5 2 1 7 7 N 1.40452 * 127.01516 * 269.68772 * 6 5 2 8 8 C 1.31398 * 107.18037 * 179.88857 * 7 6 5 9 9 N 1.32232 * 109.68450 * 0.37803 * 8 7 6 10 10 C 1.33064 * 109.79571 * 359.75525 * 9 8 7 11 11 C 1.40373 * 126.31254 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99965 * 179.97438 * 11 10 9 13 13 C 1.40265 * 120.00269 * 359.97438 * 11 10 9 14 14 N 1.30646 * 119.99861 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00110 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47261 * 89.99952 * 15 13 11 17 17 H 1.48499 * 109.47241 * 209.99947 * 15 13 11 18 18 H 1.48505 * 109.47367 * 330.00203 * 15 13 11 19 19 H 1.08995 * 109.47208 * 299.99391 * 1 2 3 20 20 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 21 21 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 24 24 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 25 25 H 1.09004 * 109.47346 * 65.00062 * 5 2 1 26 26 H 1.09002 * 109.47196 * 184.99837 * 5 2 1 27 27 H 1.08003 * 125.16121 * 180.11692 * 8 7 6 28 28 H 0.96996 * 120.00134 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2492 6 7 1.4559 -2.0634 -1.3110 7 7 1.9880 -3.2430 -0.7650 8 6 1.1485 -4.2139 -1.0462 9 7 0.1283 -3.7344 -1.7375 10 6 0.2820 -2.4251 -1.9181 11 6 -0.5966 -1.5717 -2.6038 12 1 -0.3705 -0.5190 -2.6890 13 6 -1.7683 -2.0860 -3.1783 14 7 -2.0422 -3.3592 -3.0748 15 14 -2.9372 -0.9504 -4.0912 16 1 -2.5548 -0.8952 -5.5251 17 1 -4.3246 -1.4656 -3.9685 18 1 -2.8616 0.4123 -3.5060 19 1 -0.3633 0.5137 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.7517 -0.1584 -2.1370 26 1 3.1264 -0.7995 -1.2056 27 1 1.2747 -5.2477 -0.7601 28 1 -2.8522 -3.7150 -3.4723 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212983993.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:02 Heat of formation + Delta-G solvation = 2.446973 kcal Electronic energy + Delta-G solvation = -14649.661768 eV Core-core repulsion = 12036.735640 eV Total energy + Delta-G solvation = -2612.926127 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.58367 -41.62280 -36.51914 -35.47730 -32.66952 -31.45638 -28.60960 -28.01298 -26.87319 -22.40348 -22.14116 -20.94968 -18.73418 -17.78763 -16.93331 -16.59516 -16.44520 -15.70984 -15.17298 -14.90138 -14.60766 -13.87303 -13.57610 -13.37662 -13.15880 -13.09481 -12.92848 -12.86424 -12.38729 -12.07077 -12.00323 -11.76730 -11.55905 -11.23681 -9.88566 -9.79348 -9.76326 -8.45349 -6.64776 1.26283 1.47547 1.62448 1.70207 2.15320 2.35584 2.68971 3.44055 3.61533 3.67330 3.78496 3.87684 4.18850 4.33646 4.52203 4.68109 4.79474 4.81577 4.96957 5.15337 5.21163 5.31107 5.35131 5.65953 6.05126 6.38106 6.50046 6.82826 7.17636 8.27957 8.50841 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.030030 B = 0.013025 C = 0.009838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.163346 B = 2149.135135 C = 2845.337327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 C -0.157 4.157 4 F -0.230 7.230 5 C 0.127 3.873 6 N -0.455 5.455 7 N -0.427 5.427 8 C 0.170 3.830 9 N -0.608 5.608 10 C 0.385 3.615 11 C -0.461 4.461 12 H 0.109 0.891 13 C 0.034 3.966 14 N -0.774 5.774 15 Si 0.995 3.005 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.242 1.242 19 H 0.071 0.929 20 H 0.093 0.907 21 H 0.029 0.971 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.203 0.797 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 11.081 0.268 11.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.073 3.927 3 C -0.215 4.215 4 F -0.211 7.211 5 C 0.003 3.997 6 N -0.249 5.249 7 N -0.260 5.260 8 C -0.134 4.134 9 N -0.343 5.343 10 C 0.138 3.862 11 C -0.501 4.501 12 H 0.126 0.874 13 C -0.189 4.189 14 N -0.398 5.398 15 Si 0.814 3.186 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.165 1.165 19 H 0.090 0.910 20 H 0.112 0.888 21 H 0.048 0.952 22 H 0.095 0.905 23 H 0.120 0.880 24 H 0.098 0.902 25 H 0.134 0.866 26 H 0.105 0.895 27 H 0.220 0.780 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.668 10.623 0.577 10.769 hybrid contribution -0.413 -0.272 -0.142 0.514 sum 1.255 10.352 0.435 10.436 Atomic orbital electron populations 1.22320 0.93350 1.02060 1.03961 1.21732 0.95527 0.93714 0.81746 1.22275 1.02757 0.91090 1.05368 1.92806 1.90422 1.83938 1.53893 1.22063 0.98848 0.79811 0.98963 1.50326 1.19722 1.06324 1.48575 1.77659 1.25852 0.92623 1.29833 1.25953 0.90688 0.99915 0.96810 1.71371 1.26723 1.08461 1.27765 1.21408 0.84710 0.90108 0.89989 1.18877 1.03740 0.95556 1.31972 0.87358 1.26958 0.99510 0.96857 0.95565 1.70120 1.22935 1.15172 1.31571 0.85021 0.76168 0.78945 0.78494 1.18749 1.20023 1.16472 0.90958 0.88792 0.95210 0.90481 0.88020 0.90185 0.86558 0.89532 0.78001 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 7.59 71.98 0.55 -5.12 15 2 C 0.09 3.12 1.47 -10.79 -0.02 3.11 15 3 C -0.16 -3.47 8.93 71.98 0.64 -2.83 15 4 F -0.23 -9.53 16.79 44.97 0.76 -8.78 15 5 C 0.13 4.80 5.58 86.38 0.48 5.29 15 6 N -0.45 -22.68 3.30 -345.17 -1.14 -23.82 15 7 N -0.43 -22.78 12.71 -61.45 -0.78 -23.56 15 8 C 0.17 9.11 12.97 180.87 2.35 11.45 15 9 N -0.61 -35.72 9.40 -198.07 -1.86 -37.58 15 10 C 0.39 21.06 6.05 133.83 0.81 21.87 15 11 C -0.46 -22.86 7.66 23.28 0.18 -22.69 15 12 H 0.11 4.65 6.17 -2.91 -0.02 4.63 15 13 C 0.03 1.64 5.50 85.36 0.47 2.11 15 14 N -0.77 -41.49 11.93 21.88 0.26 -41.23 15 15 Si 0.99 35.12 29.56 68.60 2.03 37.15 15 16 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 17 H -0.28 -9.63 7.11 99.48 0.71 -8.92 15 18 H -0.24 -7.71 7.11 99.48 0.71 -7.01 15 19 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 20 H 0.09 2.98 6.94 -2.39 -0.02 2.96 15 21 H 0.03 1.35 6.17 -2.38 -0.01 1.34 15 22 H 0.08 1.54 8.14 -2.39 -0.02 1.52 15 23 H 0.10 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 15 25 H 0.12 3.78 7.46 -2.39 -0.02 3.76 15 26 H 0.09 3.09 8.14 -2.39 -0.02 3.07 15 27 H 0.20 9.16 8.06 -2.91 -0.02 9.14 15 28 H 0.28 13.69 8.29 -92.71 -0.77 12.93 15 Total: -1.00 -69.89 244.56 5.88 -64.00 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 1.16 Total: 20.64 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 5.46 Total: 13.18 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -3.52 Total: -126.20 kcal Atomic # 9 Polarization: -9.53 SS G_CDS: 0.76 Total: -8.78 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Total: -69.89 5.88 -64.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212983993.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.449 kcal (2) G-P(sol) polarization free energy of solvation -69.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds