Wall clock time and date at job start Mon Mar 30 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46886 * 2 1 4 4 F 1.39895 * 109.46827 * 240.00062 * 2 1 3 5 5 C 1.52998 * 109.47322 * 119.99934 * 2 1 3 6 6 C 1.52997 * 109.47056 * 185.00124 * 5 2 1 7 7 N 1.46500 * 109.47110 * 179.97438 * 6 5 2 8 8 N 1.40455 * 127.01411 * 270.27356 * 7 6 5 9 9 C 1.31399 * 107.18044 * 180.11613 * 8 7 6 10 10 N 1.32233 * 109.68019 * 359.64484 * 9 8 7 11 11 C 1.33063 * 109.80463 * 0.23082 * 10 9 8 12 12 C 1.40366 * 126.31935 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99663 * 179.97438 * 12 11 10 14 14 C 1.40261 * 119.99980 * 359.97309 * 12 11 10 15 15 N 1.30649 * 120.00354 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99961 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47033 * 60.00139 * 16 14 12 18 18 H 1.48508 * 109.46924 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47332 * 299.99823 * 16 14 12 20 20 H 1.09001 * 109.47159 * 300.00192 * 1 2 3 21 21 H 1.08998 * 109.47470 * 60.00271 * 1 2 3 22 22 H 1.09003 * 109.47306 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47038 * 64.99627 * 5 2 1 24 24 H 1.09008 * 109.46909 * 304.99714 * 5 2 1 25 25 H 1.09004 * 109.47331 * 59.99810 * 6 5 2 26 26 H 1.08996 * 109.47193 * 299.99865 * 6 5 2 27 27 H 1.08002 * 125.16280 * 179.91662 * 9 8 7 28 28 H 0.96995 * 120.00474 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9962 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 3.5648 -0.6132 1.3136 7 7 4.0532 -1.3032 2.5101 8 7 4.2378 -0.7513 3.7884 9 6 4.6909 -1.7106 4.5636 10 7 4.7986 -2.8308 3.8693 11 6 4.4181 -2.6201 2.6118 12 6 4.3942 -3.5714 1.5799 13 1 4.0644 -3.2877 0.5914 14 6 4.7988 -4.8904 1.8326 15 7 5.1974 -5.2338 3.0285 16 14 4.7677 -6.1563 0.4592 17 1 5.6586 -5.7127 -0.6431 18 1 5.2399 -7.4642 0.9807 19 1 3.3808 -6.2982 -0.0520 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.7516 -1.7714 1.2056 24 1 1.6054 -0.2616 2.1370 25 1 3.8532 0.4371 1.3572 26 1 3.9994 -1.0727 0.4259 27 1 4.9339 -1.6019 5.6103 28 1 5.4775 -6.1459 3.2031 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212984090.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:07 Heat of formation + Delta-G solvation = -5.194106 kcal Electronic energy + Delta-G solvation = -14066.447251 eV Core-core repulsion = 11453.189781 eV Total energy + Delta-G solvation = -2613.257470 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.59065 -41.63404 -36.29053 -35.53961 -33.23743 -31.46796 -29.71328 -27.75328 -25.01716 -22.33601 -22.23319 -21.53197 -18.75791 -17.66046 -17.58389 -16.56864 -16.26433 -15.75335 -15.30959 -15.23240 -14.76697 -14.22569 -13.77311 -13.55346 -13.20086 -13.04924 -12.87638 -12.72221 -12.34796 -12.09043 -11.97172 -11.67619 -11.56233 -11.29674 -9.95095 -9.84375 -9.81022 -8.50608 -6.70981 1.22527 1.43125 1.56871 1.66669 2.13126 2.32346 2.64599 3.43304 3.65263 3.73505 3.77356 3.89156 4.15017 4.25427 4.38144 4.45528 4.62322 4.82909 4.91399 5.06989 5.17599 5.22452 5.27076 5.61909 6.01630 6.35259 6.45137 6.77883 7.11927 8.23658 8.45230 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.023967 B = 0.011336 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.004029 B = 2469.479847 C = 3435.186922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 H 0.109 0.891 4 F -0.228 7.228 5 C -0.150 4.150 6 C 0.149 3.851 7 N -0.460 5.460 8 N -0.426 5.426 9 C 0.174 3.826 10 N -0.606 5.606 11 C 0.378 3.622 12 C -0.472 4.472 13 H 0.095 0.905 14 C 0.037 3.963 15 N -0.769 5.769 16 Si 0.996 3.004 17 H -0.256 1.256 18 H -0.266 1.266 19 H -0.257 1.257 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.210 0.790 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 5.141 -7.269 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.058 3.942 3 H 0.127 0.873 4 F -0.209 7.209 5 C -0.189 4.189 6 C 0.026 3.974 7 N -0.254 5.254 8 N -0.260 5.260 9 C -0.129 4.129 10 N -0.341 5.341 11 C 0.130 3.870 12 C -0.513 4.513 13 H 0.113 0.887 14 C -0.186 4.186 15 N -0.393 5.393 16 Si 0.815 3.185 17 H -0.180 1.180 18 H -0.190 1.190 19 H -0.181 1.181 20 H 0.107 0.893 21 H 0.103 0.897 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.226 0.774 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.689 5.488 -6.788 10.997 hybrid contribution 0.178 -0.642 -0.290 0.727 sum -6.512 4.845 -7.078 10.769 Atomic orbital electron populations 1.22342 0.92409 1.03634 1.04717 1.21662 0.96251 0.96439 0.79889 0.87325 1.92791 1.90628 1.83935 1.53571 1.22505 0.95519 1.01761 0.99126 1.21324 0.94196 0.97589 0.84275 1.50494 1.58419 1.08440 1.08053 1.77578 1.33592 1.23648 0.91152 1.26032 0.97587 0.88263 1.01053 1.71367 1.33417 1.25881 1.03471 1.21389 0.89697 0.83148 0.92769 1.18820 1.43603 0.93489 0.95424 0.88657 1.26898 0.91939 1.00710 0.99078 1.70080 1.26499 1.19974 1.22762 0.85062 0.80112 0.76005 0.77324 1.18010 1.19029 1.18070 0.89345 0.89733 0.92241 0.92521 0.90005 0.89266 0.90178 0.77383 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 9.65 71.98 0.69 -2.68 15 2 C 0.09 2.33 3.96 30.59 0.12 2.45 15 3 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 4 F -0.23 -6.87 16.76 44.97 0.75 -6.11 15 5 C -0.15 -4.94 5.31 30.59 0.16 -4.78 15 6 C 0.15 5.84 6.21 86.38 0.54 6.38 15 7 N -0.46 -23.28 3.72 -345.18 -1.28 -24.56 15 8 N -0.43 -21.94 12.71 -61.45 -0.78 -22.73 15 9 C 0.17 9.09 12.97 180.87 2.35 11.43 15 10 N -0.61 -35.85 9.40 -198.07 -1.86 -37.71 15 11 C 0.38 21.59 7.51 133.83 1.01 22.60 15 12 C -0.47 -25.61 9.04 23.28 0.21 -25.40 15 13 H 0.10 4.77 7.24 -2.91 -0.02 4.75 15 14 C 0.04 1.89 5.50 85.36 0.47 2.36 15 15 N -0.77 -42.26 11.93 21.88 0.26 -42.00 15 16 Si 1.00 37.80 29.56 68.60 2.03 39.83 15 17 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 18 H -0.27 -9.56 7.11 99.48 0.71 -8.85 15 19 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 20 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.08 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 23 H 0.06 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.08 2.67 8.14 -2.38 -0.02 2.65 15 25 H 0.09 3.09 8.14 -2.38 -0.02 3.07 15 26 H 0.08 3.15 7.25 -2.39 -0.02 3.13 15 27 H 0.21 8.98 8.06 -2.91 -0.02 8.95 15 28 H 0.29 14.07 8.29 -92.71 -0.77 13.30 15 Total: -1.00 -68.75 253.39 5.82 -62.93 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 1.15 Total: 17.99 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 5.55 Total: 12.35 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -3.67 Total: -127.00 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.75 Total: -6.11 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -68.75 5.82 -62.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212984090.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.739 kcal (2) G-P(sol) polarization free energy of solvation -68.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds