Wall clock time and date at job start Mon Mar 30 2020 02:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 F 1.39905 * 109.47157 * 120.00234 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 N 1.46496 * 109.47487 * 179.97438 * 5 2 1 7 7 N 1.28658 * 126.06098 * 90.03061 * 6 5 2 8 8 N 1.28391 * 111.33667 * 180.02562 * 7 6 5 9 9 C 1.33064 * 109.78917 * 359.97438 * 8 7 6 10 10 C 1.37719 * 126.06486 * 269.71806 * 6 5 2 11 11 C 1.40375 * 127.47208 * 359.96498 * 10 6 5 12 12 H 1.08000 * 119.99941 * 359.97438 * 11 10 6 13 13 C 1.40150 * 119.99753 * 179.97438 * 11 10 6 14 14 N 1.30767 * 120.00043 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99707 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47332 * 60.00104 * 15 13 11 17 17 H 1.48497 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47271 * 300.00221 * 15 13 11 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 5 2 1 26 26 H 1.09002 * 109.46716 * 60.00091 * 5 2 1 27 27 H 1.07998 * 127.02887 * 180.02562 * 9 8 7 28 28 H 0.96997 * 119.99505 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 9 1.9963 -0.6596 1.1423 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7208 -1.2495 7 7 4.2628 -1.6214 -0.7300 8 7 5.5044 -1.3380 -0.8929 9 6 5.6213 -0.1900 -1.5554 10 6 4.3153 0.2408 -1.8113 11 6 3.9169 1.4027 -2.4908 12 1 2.8668 1.6201 -2.6189 13 6 4.8819 2.2806 -3.0029 14 7 6.1533 2.0171 -2.8482 15 14 4.3517 3.8264 -3.9078 16 1 3.5385 4.6763 -3.0013 17 1 5.5537 4.5795 -4.3473 18 1 3.5414 3.4520 -5.0945 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 -1.7489 -1.2493 26 1 1.6767 -0.2074 -2.1392 27 1 6.5373 0.3056 -1.8413 28 1 6.8211 2.6249 -3.2023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212984315.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:00 Heat of formation + Delta-G solvation = 22.309192 kcal Electronic energy + Delta-G solvation = -14685.960427 eV Core-core repulsion = 12073.895590 eV Total energy + Delta-G solvation = -2612.064837 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.15867 -40.81061 -35.25077 -33.94902 -31.65031 -29.42833 -27.15532 -26.49236 -25.30945 -20.85080 -20.60722 -19.34210 -17.40610 -16.11640 -15.66393 -15.28704 -14.83280 -14.25639 -13.62555 -13.27504 -12.87894 -12.49178 -12.26425 -12.05698 -11.84441 -11.66571 -11.52585 -11.38692 -10.79687 -10.70055 -10.59072 -10.39377 -9.62234 -9.45859 -8.92296 -8.42594 -7.48644 -6.84878 -4.56548 2.83397 2.97658 2.99623 3.41841 3.73088 3.96748 4.43394 4.81362 4.83076 5.00568 5.12037 5.18523 5.47418 5.69324 5.82983 5.92066 6.01147 6.15666 6.46340 6.71926 6.74844 6.89017 7.33791 7.59298 7.61685 8.19767 8.49110 8.68155 8.81171 10.12000 10.60216 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.030520 B = 0.012936 C = 0.009842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.208583 B = 2164.043119 C = 2844.134389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.100 3.900 3 C -0.171 4.171 4 F -0.203 7.203 5 C 0.125 3.875 6 N -0.367 5.367 7 N -0.192 5.192 8 N -0.284 5.284 9 C -0.152 4.152 10 C 0.174 3.826 11 C -0.438 4.438 12 H 0.078 0.922 13 C 0.076 3.924 14 N -0.792 5.792 15 Si 0.926 3.074 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.265 1.265 19 H 0.076 0.924 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.193 0.807 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 3.525 -0.269 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.080 3.920 3 C -0.229 4.229 4 F -0.183 7.183 5 C 0.000 4.000 6 N -0.163 5.163 7 N -0.167 5.167 8 N -0.149 5.149 9 C -0.314 4.314 10 C 0.051 3.949 11 C -0.476 4.476 12 H 0.096 0.904 13 C -0.144 4.144 14 N -0.419 5.419 15 Si 0.750 3.250 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.190 1.190 19 H 0.095 0.905 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.210 0.790 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.286 2.161 0.526 9.549 hybrid contribution -0.348 1.799 -0.999 2.087 sum -9.635 3.959 -0.473 10.427 Atomic orbital electron populations 1.22320 0.93456 1.03269 1.03583 1.21369 0.94042 0.93422 0.83139 1.22455 1.04693 0.93284 1.02426 1.92880 1.90370 1.82727 1.52369 1.21912 0.78041 1.02099 0.97966 1.46834 1.05384 1.18968 1.45094 1.77595 0.96475 1.16849 1.25814 1.74062 1.09797 1.15816 1.15256 1.24405 0.98181 0.96799 1.11967 1.19882 0.89290 0.90549 0.95220 1.18455 0.94378 1.02836 1.31891 0.90382 1.25724 0.94267 0.99458 0.94929 1.69561 1.01282 1.35524 1.35546 0.86074 0.79016 0.80053 0.79875 1.18930 1.20055 1.18991 0.90533 0.91241 0.91466 0.92489 0.89686 0.90435 0.89228 0.88157 0.79010 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 8.93 37.16 0.33 -1.72 15 2 C 0.10 1.72 1.46 -90.63 -0.13 1.58 15 3 C -0.17 -3.01 7.66 37.15 0.28 -2.73 15 4 F -0.20 -4.20 16.73 2.25 0.04 -4.17 15 5 C 0.12 2.35 5.44 -4.04 -0.02 2.32 15 6 N -0.37 -9.04 3.04 -58.49 -0.18 -9.21 15 7 N -0.19 -5.29 13.09 60.35 0.79 -4.50 15 8 N -0.28 -8.19 12.31 31.01 0.38 -7.81 15 9 C -0.15 -4.31 11.04 -16.40 -0.18 -4.49 15 10 C 0.17 4.57 5.44 -83.80 -0.46 4.12 15 11 C -0.44 -10.60 7.67 -38.06 -0.29 -10.89 15 12 H 0.08 1.70 6.26 -52.49 -0.33 1.37 15 13 C 0.08 1.77 5.50 -17.29 -0.10 1.68 15 14 N -0.79 -19.50 10.43 55.56 0.58 -18.92 15 15 Si 0.93 17.34 29.56 -169.99 -5.03 12.31 15 16 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 17 H -0.28 -5.11 7.11 56.52 0.40 -4.70 15 18 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 19 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 20 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.08 1.87 6.07 -51.93 -0.32 1.55 15 24 H 0.08 1.23 7.23 -51.93 -0.38 0.86 15 25 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 26 H 0.10 1.66 7.47 -51.93 -0.39 1.27 15 27 H 0.19 5.47 5.92 -52.49 -0.31 5.16 15 28 H 0.28 6.35 8.29 -40.82 -0.34 6.01 15 LS Contribution 241.56 15.07 3.64 3.64 Total: -1.00 -30.27 241.56 -3.30 -33.57 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -2.97 Total: 5.20 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -0.56 Total: -10.11 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 1.57 Total: -40.45 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.04 Total: -4.17 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.27 -3.30 -33.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212984315.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.879 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds