Wall clock time and date at job start Mon Mar 30 2020 02:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 F 1.39905 * 109.47157 * 120.00234 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 N 1.46496 * 109.47487 * 179.97438 * 5 2 1 7 7 N 1.28658 * 126.06098 * 90.03061 * 6 5 2 8 8 N 1.28391 * 111.33667 * 180.02562 * 7 6 5 9 9 C 1.33064 * 109.78917 * 359.97438 * 8 7 6 10 10 C 1.37719 * 126.06486 * 269.71806 * 6 5 2 11 11 C 1.40375 * 127.47208 * 359.96498 * 10 6 5 12 12 H 1.08000 * 119.99941 * 359.97438 * 11 10 6 13 13 C 1.40150 * 119.99753 * 179.97438 * 11 10 6 14 14 N 1.30767 * 120.00043 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99707 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47332 * 60.00104 * 15 13 11 17 17 H 1.48497 * 109.47028 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47271 * 300.00221 * 15 13 11 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 5 2 1 26 26 H 1.09002 * 109.46716 * 60.00091 * 5 2 1 27 27 H 1.07998 * 127.02887 * 180.02562 * 9 8 7 28 28 H 0.96997 * 119.99505 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 9 1.9963 -0.6596 1.1423 5 6 2.0400 -0.7213 -1.2492 6 7 3.5050 -0.7208 -1.2495 7 7 4.2628 -1.6214 -0.7300 8 7 5.5044 -1.3380 -0.8929 9 6 5.6213 -0.1900 -1.5554 10 6 4.3153 0.2408 -1.8113 11 6 3.9169 1.4027 -2.4908 12 1 2.8668 1.6201 -2.6189 13 6 4.8819 2.2806 -3.0029 14 7 6.1533 2.0171 -2.8482 15 14 4.3517 3.8264 -3.9078 16 1 3.5385 4.6763 -3.0013 17 1 5.5537 4.5795 -4.3473 18 1 3.5414 3.4520 -5.0945 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 -1.7489 -1.2493 26 1 1.6767 -0.2074 -2.1392 27 1 6.5373 0.3056 -1.8413 28 1 6.8211 2.6249 -3.2023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212984315.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:00 Heat of formation + Delta-G solvation = 2.141122 kcal Electronic energy + Delta-G solvation = -14686.834980 eV Core-core repulsion = 12073.895590 eV Total energy + Delta-G solvation = -2612.939390 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.64454 -42.79324 -36.75553 -35.79721 -33.33811 -31.38733 -28.48782 -28.03820 -27.15992 -22.78444 -22.28966 -21.01948 -19.23282 -17.90525 -17.22208 -16.69158 -16.45346 -15.80750 -15.42973 -15.05134 -14.53098 -13.84430 -13.72602 -13.55926 -13.19856 -13.02731 -12.97716 -12.84007 -12.56875 -12.18686 -12.08272 -11.73845 -11.45935 -11.33235 -10.98062 -10.33834 -9.50908 -8.64715 -6.51105 1.19300 1.46064 1.60151 1.71366 2.11976 2.32438 2.38967 3.19463 3.49655 3.56182 3.72135 3.87158 4.22110 4.42141 4.67206 4.68922 4.77893 4.82259 5.02200 5.14234 5.20331 5.32239 5.40601 5.62473 5.66493 6.31624 6.40210 6.76731 6.92609 8.34671 8.53343 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.030520 B = 0.012936 C = 0.009842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.208583 B = 2164.043119 C = 2844.134389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.094 3.906 3 C -0.167 4.167 4 F -0.229 7.229 5 C 0.110 3.890 6 N -0.366 5.366 7 N -0.213 5.213 8 N -0.312 5.312 9 C -0.191 4.191 10 C 0.167 3.833 11 C -0.446 4.446 12 H 0.105 0.895 13 C 0.032 3.968 14 N -0.823 5.823 15 Si 1.005 2.995 16 H -0.252 1.252 17 H -0.275 1.275 18 H -0.254 1.254 19 H 0.104 0.896 20 H 0.081 0.919 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.034 0.966 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.182 0.818 28 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.233 5.417 -1.397 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.074 3.926 3 C -0.224 4.224 4 F -0.210 7.210 5 C -0.013 4.013 6 N -0.163 5.163 7 N -0.187 5.187 8 N -0.178 5.178 9 C -0.354 4.354 10 C 0.044 3.956 11 C -0.483 4.483 12 H 0.123 0.877 13 C -0.185 4.185 14 N -0.450 5.450 15 Si 0.824 3.176 16 H -0.176 1.176 17 H -0.199 1.199 18 H -0.178 1.178 19 H 0.123 0.877 20 H 0.100 0.900 21 H 0.096 0.904 22 H 0.094 0.906 23 H 0.053 0.947 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.145 0.855 27 H 0.199 0.801 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.993 4.018 -0.581 12.661 hybrid contribution 0.508 1.251 -0.667 1.506 sum -11.485 5.270 -1.247 12.698 Atomic orbital electron populations 1.22286 0.88818 1.04741 1.05625 1.21698 0.97330 0.92335 0.81217 1.22403 1.01369 0.94241 1.04384 1.92832 1.91065 1.83267 1.53801 1.22475 0.74818 1.03792 1.00194 1.47102 1.07245 1.17805 1.44163 1.77408 0.96454 1.18137 1.26744 1.73962 1.10931 1.16575 1.16324 1.24454 0.99254 0.97635 1.14044 1.20191 0.88905 0.91411 0.95120 1.18943 0.96026 1.02091 1.31201 0.87744 1.26902 0.93895 1.02692 0.95056 1.69657 1.02818 1.36910 1.35596 0.84889 0.78767 0.75268 0.78684 1.17567 1.19919 1.17756 0.87694 0.90007 0.90371 0.90643 0.94678 0.88385 0.87995 0.85492 0.80137 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 8.93 71.98 0.64 -2.54 15 2 C 0.09 3.01 1.46 -10.80 -0.02 3.00 15 3 C -0.17 -5.53 7.66 71.98 0.55 -4.98 15 4 F -0.23 -9.37 16.73 44.97 0.75 -8.62 15 5 C 0.11 3.93 5.44 86.38 0.47 4.40 15 6 N -0.37 -18.12 3.04 -338.97 -1.03 -19.15 15 7 N -0.21 -12.01 13.09 37.02 0.48 -11.52 15 8 N -0.31 -18.79 12.31 -55.81 -0.69 -19.48 15 9 C -0.19 -11.30 11.04 84.90 0.94 -10.36 15 10 C 0.17 8.89 5.44 39.14 0.21 9.10 15 11 C -0.45 -21.01 7.67 23.25 0.18 -20.83 15 12 H 0.10 4.23 6.26 -2.91 -0.02 4.21 15 13 C 0.03 1.44 5.50 85.32 0.47 1.91 15 14 N -0.82 -40.72 10.43 21.87 0.23 -40.50 15 15 Si 1.00 33.33 29.56 68.60 2.03 35.36 15 16 H -0.25 -7.85 7.11 99.48 0.71 -7.14 15 17 H -0.27 -9.00 7.11 99.48 0.71 -8.29 15 18 H -0.25 -7.96 7.11 99.48 0.71 -7.26 15 19 H 0.10 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.08 1.44 8.14 -2.38 -0.02 1.42 15 22 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.03 1.51 6.07 -2.39 -0.01 1.50 15 24 H 0.10 2.77 7.23 -2.39 -0.02 2.75 15 25 H 0.10 3.36 8.14 -2.39 -0.02 3.34 15 26 H 0.13 3.80 7.47 -2.39 -0.02 3.78 15 27 H 0.18 10.85 5.92 -2.91 -0.02 10.83 15 28 H 0.29 13.04 8.29 -92.71 -0.77 12.27 15 Total: -1.00 -68.02 241.56 6.39 -61.63 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 1.17 Total: 22.58 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 3.45 Total: -20.30 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -1.01 Total: -90.65 kcal Atomic # 9 Polarization: -9.37 SS G_CDS: 0.75 Total: -8.62 kcal Atomic # 14 Polarization: 33.33 SS G_CDS: 2.03 Total: 35.36 kcal Total: -68.02 6.39 -61.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212984315.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.768 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds