Wall clock time and date at job start Mon Mar 30 2020 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 F 1.39892 * 109.47339 * 239.99979 * 2 1 3 5 5 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 6 6 C 1.52997 * 109.47060 * 185.00166 * 5 2 1 7 7 N 1.46500 * 109.47473 * 180.02562 * 6 5 2 8 8 N 1.28652 * 126.06466 * 269.69095 * 7 6 5 9 9 N 1.28392 * 111.33468 * 179.87267 * 8 7 6 10 10 C 1.33059 * 109.79099 * 0.39829 * 9 8 7 11 11 C 1.37716 * 126.06083 * 90.00072 * 7 6 5 12 12 C 1.40377 * 127.47425 * 359.97438 * 11 7 6 13 13 H 1.07998 * 119.99818 * 359.97438 * 12 11 7 14 14 C 1.40154 * 120.00118 * 180.02562 * 12 11 7 15 15 N 1.30767 * 119.99645 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00074 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47061 * 59.99523 * 16 14 12 18 18 H 1.48499 * 109.47130 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47033 * 299.99876 * 16 14 12 20 20 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 21 21 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 22 22 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 305.00335 * 5 2 1 24 24 H 1.09001 * 109.47194 * 65.00515 * 5 2 1 25 25 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 26 26 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 27 27 H 1.07996 * 127.02867 * 179.75151 * 10 9 8 28 28 H 0.97000 * 119.99650 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5648 -0.6132 1.3138 7 7 4.0532 -1.3042 2.5097 8 7 4.2255 -0.7782 3.6711 9 7 4.6622 -1.6418 4.5149 10 6 4.8099 -2.8213 3.9169 11 6 4.4150 -2.6307 2.5886 12 6 4.3926 -3.5847 1.5590 13 1 4.0625 -3.3040 0.5698 14 6 4.7975 -4.9018 1.8152 15 7 5.1967 -5.2418 3.0131 16 14 4.7670 -6.1715 0.4454 17 1 5.6574 -5.7305 -0.6582 18 1 5.2398 -7.4776 0.9705 19 1 3.3800 -6.3155 -0.0652 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6053 -0.2616 2.1370 24 1 1.7517 -1.7715 1.2057 25 1 3.9995 -1.0727 0.4261 26 1 3.8532 0.4370 1.3574 27 1 5.1628 -3.7381 4.3653 28 1 5.4773 -6.1532 3.1903 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212984414.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:04 Heat of formation + Delta-G solvation = 14.140154 kcal Electronic energy + Delta-G solvation = -14104.379684 eV Core-core repulsion = 11491.960611 eV Total energy + Delta-G solvation = -2612.419073 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.49346 -40.79980 -35.06632 -33.93484 -32.20847 -29.37400 -28.62501 -25.53835 -23.86818 -21.21198 -20.75407 -19.55401 -17.36086 -16.51309 -15.93112 -15.30554 -14.89966 -14.46145 -13.97593 -13.68842 -13.08433 -12.76350 -12.35966 -12.16708 -11.87281 -11.81946 -11.36145 -11.09378 -10.83281 -10.70123 -10.63688 -10.53256 -9.61655 -9.48326 -8.93296 -8.44313 -7.49807 -6.82799 -4.54583 2.87628 3.01956 3.04570 3.44451 3.77402 3.98561 4.43754 4.69656 4.78981 4.83530 5.03325 5.15005 5.32390 5.58596 5.62629 5.74198 5.87610 5.98709 6.27707 6.38762 6.72860 6.93425 7.35669 7.60710 7.64318 8.24336 8.50187 8.70869 8.83763 10.13991 10.58614 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.011312 C = 0.008162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.504177 B = 2474.665769 C = 3429.503579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.093 3.907 3 H 0.083 0.917 4 F -0.214 7.214 5 C -0.162 4.162 6 C 0.145 3.855 7 N -0.370 5.370 8 N -0.206 5.206 9 N -0.284 5.284 10 C -0.152 4.152 11 C 0.174 3.826 12 C -0.438 4.438 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.793 5.793 16 Si 0.928 3.072 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.194 0.806 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 3.650 -7.785 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.056 3.944 3 H 0.101 0.899 4 F -0.195 7.195 5 C -0.201 4.201 6 C 0.021 3.979 7 N -0.167 5.167 8 N -0.181 5.181 9 N -0.149 5.149 10 C -0.314 4.314 11 C 0.050 3.950 12 C -0.476 4.476 13 H 0.097 0.903 14 C -0.143 4.143 15 N -0.420 5.420 16 Si 0.753 3.247 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.189 1.189 20 H 0.093 0.907 21 H 0.084 0.916 22 H 0.087 0.913 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.210 0.790 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.307 4.844 -6.801 10.463 hybrid contribution 0.047 -1.663 -1.434 2.196 sum -6.260 3.181 -8.234 10.822 Atomic orbital electron populations 1.22358 0.94375 1.03702 1.03121 1.21498 0.94762 0.96076 0.82082 0.89868 1.92821 1.90264 1.83452 1.52928 1.22602 0.96786 1.03176 0.97550 1.21252 0.93117 0.97447 0.86103 1.46942 1.52171 1.08576 1.08988 1.77492 1.28461 1.22935 0.89234 1.74024 1.13659 1.01370 1.25847 1.24399 1.17572 0.97348 0.92085 1.19930 0.96036 0.82484 0.96516 1.18509 1.40511 0.92731 0.95819 0.90292 1.25747 0.92700 0.99130 0.96755 1.69562 1.31176 1.20312 1.20937 0.86027 0.79723 0.78566 0.80430 1.18891 1.20051 1.18912 0.90709 0.91596 0.91299 0.89650 0.89684 0.89275 0.90141 0.78986 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.65 37.16 0.36 -1.50 15 2 C 0.09 1.18 3.96 -26.73 -0.11 1.08 15 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 15 4 F -0.21 -3.26 16.76 2.25 0.04 -3.22 15 5 C -0.16 -2.61 5.31 -26.73 -0.14 -2.76 15 6 C 0.14 2.75 6.11 -4.04 -0.02 2.73 15 7 N -0.37 -9.22 3.41 -58.49 -0.20 -9.42 15 8 N -0.21 -5.57 13.09 60.35 0.79 -4.78 15 9 N -0.28 -8.12 12.31 31.01 0.38 -7.74 15 10 C -0.15 -4.34 11.04 -16.41 -0.18 -4.52 15 11 C 0.17 4.75 6.81 -83.80 -0.57 4.18 15 12 C -0.44 -11.31 9.06 -38.06 -0.34 -11.66 15 13 H 0.08 1.91 7.30 -52.49 -0.38 1.53 15 14 C 0.08 1.86 5.50 -17.29 -0.10 1.77 15 15 N -0.79 -20.01 10.43 55.56 0.58 -19.44 15 16 Si 0.93 18.22 29.56 -169.99 -5.03 13.19 15 17 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 18 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 24 H 0.08 1.53 8.14 -51.93 -0.42 1.11 15 25 H 0.09 1.68 7.27 -51.93 -0.38 1.30 15 26 H 0.08 1.36 8.14 -51.93 -0.42 0.93 15 27 H 0.19 5.52 5.92 -52.49 -0.31 5.21 15 28 H 0.28 6.48 8.29 -40.82 -0.34 6.14 15 LS Contribution 250.09 15.07 3.77 3.77 Total: -1.00 -30.29 250.09 -3.94 -34.23 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.16 Total: 4.10 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.11 Total: -10.69 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 1.55 Total: -41.38 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.29 -3.94 -34.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212984414.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.371 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds