Wall clock time and date at job start Mon Mar 30 2020 02:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 F 1.39892 * 109.47339 * 239.99979 * 2 1 3 5 5 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 6 6 C 1.52997 * 109.47060 * 185.00166 * 5 2 1 7 7 N 1.46500 * 109.47473 * 180.02562 * 6 5 2 8 8 N 1.28652 * 126.06466 * 269.69095 * 7 6 5 9 9 N 1.28392 * 111.33468 * 179.87267 * 8 7 6 10 10 C 1.33059 * 109.79099 * 0.39829 * 9 8 7 11 11 C 1.37716 * 126.06083 * 90.00072 * 7 6 5 12 12 C 1.40377 * 127.47425 * 359.97438 * 11 7 6 13 13 H 1.07998 * 119.99818 * 359.97438 * 12 11 7 14 14 C 1.40154 * 120.00118 * 180.02562 * 12 11 7 15 15 N 1.30767 * 119.99645 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00074 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47061 * 59.99523 * 16 14 12 18 18 H 1.48499 * 109.47130 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47033 * 299.99876 * 16 14 12 20 20 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 21 21 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 22 22 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47398 * 305.00335 * 5 2 1 24 24 H 1.09001 * 109.47194 * 65.00515 * 5 2 1 25 25 H 1.09002 * 109.47153 * 300.00319 * 6 5 2 26 26 H 1.08998 * 109.47533 * 59.99948 * 6 5 2 27 27 H 1.07996 * 127.02867 * 179.75151 * 10 9 8 28 28 H 0.97000 * 119.99650 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0400 -0.7212 1.2493 6 6 3.5648 -0.6132 1.3138 7 7 4.0532 -1.3042 2.5097 8 7 4.2255 -0.7782 3.6711 9 7 4.6622 -1.6418 4.5149 10 6 4.8099 -2.8213 3.9169 11 6 4.4150 -2.6307 2.5886 12 6 4.3926 -3.5847 1.5590 13 1 4.0625 -3.3040 0.5698 14 6 4.7975 -4.9018 1.8152 15 7 5.1967 -5.2418 3.0131 16 14 4.7670 -6.1715 0.4454 17 1 5.6574 -5.7305 -0.6582 18 1 5.2398 -7.4776 0.9705 19 1 3.3800 -6.3155 -0.0652 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6053 -0.2616 2.1370 24 1 1.7517 -1.7715 1.2057 25 1 3.9995 -1.0727 0.4261 26 1 3.8532 0.4370 1.3574 27 1 5.1628 -3.7381 4.3653 28 1 5.4773 -6.1532 3.1903 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212984414.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:03 Heat of formation + Delta-G solvation = -5.125967 kcal Electronic energy + Delta-G solvation = -14105.215126 eV Core-core repulsion = 11491.960611 eV Total energy + Delta-G solvation = -2613.254515 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.60835 -42.83697 -36.53963 -35.86905 -33.69711 -31.38919 -30.06854 -27.52821 -25.31028 -22.81788 -22.34785 -21.45043 -19.28628 -17.77662 -17.60078 -16.77875 -16.40405 -15.91657 -15.62355 -15.25192 -14.82939 -14.08004 -13.81077 -13.69857 -13.25428 -13.06454 -12.98397 -12.87395 -12.26873 -12.19976 -11.98034 -11.65403 -11.51974 -11.42005 -11.03779 -10.40540 -9.57822 -8.70046 -6.57179 1.14508 1.41854 1.55984 1.66898 2.09736 2.29065 2.33997 3.14643 3.58647 3.66711 3.76668 3.88373 4.13470 4.29671 4.37223 4.56929 4.70690 4.83588 4.94884 5.03548 5.16624 5.21374 5.35899 5.58763 5.61822 6.26301 6.36909 6.72157 6.87295 8.29348 8.47534 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.011312 C = 0.008162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.504177 B = 2474.665769 C = 3429.503579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.113 0.887 4 F -0.228 7.228 5 C -0.152 4.152 6 C 0.133 3.867 7 N -0.369 5.369 8 N -0.210 5.210 9 N -0.307 5.307 10 C -0.184 4.184 11 C 0.156 3.844 12 C -0.458 4.458 13 H 0.091 0.909 14 C 0.035 3.965 15 N -0.818 5.818 16 Si 1.006 2.994 17 H -0.257 1.257 18 H -0.265 1.265 19 H -0.258 1.258 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.090 0.910 26 H 0.105 0.895 27 H 0.184 0.816 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 3.595 -9.764 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.059 3.941 3 H 0.130 0.870 4 F -0.209 7.209 5 C -0.191 4.191 6 C 0.011 3.989 7 N -0.166 5.166 8 N -0.185 5.185 9 N -0.173 5.173 10 C -0.346 4.346 11 C 0.032 3.968 12 C -0.495 4.495 13 H 0.109 0.891 14 C -0.183 4.183 15 N -0.445 5.445 16 Si 0.825 3.175 17 H -0.181 1.181 18 H -0.189 1.189 19 H -0.182 1.182 20 H 0.107 0.893 21 H 0.103 0.897 22 H 0.078 0.922 23 H 0.105 0.895 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.123 0.877 27 H 0.201 0.799 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.092 4.820 -8.774 12.268 hybrid contribution 0.299 -1.634 -0.810 1.848 sum -6.792 3.186 -9.584 12.171 Atomic orbital electron populations 1.22351 0.92363 1.03683 1.04810 1.21651 0.96292 0.96528 0.79631 0.86966 1.92796 1.90602 1.83934 1.53555 1.22505 0.94567 1.02298 0.99724 1.21715 0.95053 0.98228 0.83907 1.47276 1.51579 1.08129 1.09640 1.77323 1.28263 1.22884 0.90048 1.73948 1.14826 1.01639 1.26848 1.24411 1.19598 0.97366 0.93240 1.20260 0.96188 0.83833 0.96504 1.18903 1.41117 0.93455 0.95983 0.89136 1.26839 0.91360 1.00717 0.99345 1.69618 1.30489 1.21501 1.22904 0.84885 0.80045 0.75703 0.76901 1.18135 1.18858 1.18185 0.89263 0.89697 0.92223 0.89505 0.92099 0.89168 0.87705 0.79906 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 9.65 71.98 0.69 -2.48 15 2 C 0.10 2.20 3.96 30.60 0.12 2.32 15 3 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15 4 F -0.23 -6.47 16.76 44.97 0.75 -5.72 15 5 C -0.15 -4.72 5.31 30.59 0.16 -4.55 15 6 C 0.13 4.91 6.11 86.38 0.53 5.44 15 7 N -0.37 -18.41 3.41 -338.97 -1.16 -19.57 15 8 N -0.21 -11.44 13.09 37.02 0.48 -10.96 15 9 N -0.31 -17.98 12.31 -55.82 -0.69 -18.67 15 10 C -0.18 -10.83 11.04 84.90 0.94 -9.90 15 11 C 0.16 8.64 6.81 39.14 0.27 8.90 15 12 C -0.46 -23.58 9.06 23.26 0.21 -23.37 15 13 H 0.09 4.32 7.30 -2.91 -0.02 4.30 15 14 C 0.03 1.67 5.50 85.32 0.47 2.14 15 15 N -0.82 -41.41 10.43 21.87 0.23 -41.18 15 16 Si 1.01 35.98 29.56 68.60 2.03 38.00 15 17 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 18 H -0.26 -8.93 7.11 99.48 0.71 -8.22 15 19 H -0.26 -8.92 7.11 99.48 0.71 -8.22 15 20 H 0.09 1.37 8.14 -2.39 -0.02 1.35 15 21 H 0.08 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 15 23 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.09 3.31 7.27 -2.39 -0.02 3.29 15 26 H 0.10 3.33 8.14 -2.39 -0.02 3.31 15 27 H 0.18 10.93 5.92 -2.91 -0.02 10.92 15 28 H 0.29 13.32 8.29 -92.71 -0.77 12.55 15 Total: -1.00 -65.52 250.09 6.20 -59.32 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 1.16 Total: 20.27 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 3.39 Total: -21.50 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -1.13 Total: -90.38 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.75 Total: -5.72 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.00 kcal Total: -65.52 6.20 -59.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212984414.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.198 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds