Wall clock time and date at job start Mon Mar 30 2020 02:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47473 * 2 1 4 4 C 1.50699 * 109.86945 * 181.60148 * 3 2 1 5 5 O 1.20823 * 119.99818 * 264.55564 * 4 3 2 6 6 O 1.34225 * 119.99938 * 84.56944 * 4 3 2 7 7 C 1.54323 * 110.00912 * 60.50131 * 3 2 1 8 8 C 1.55150 * 102.94285 * 262.70297 * 7 3 2 9 9 C 1.54903 * 101.58405 * 324.50127 * 8 7 3 10 10 N 1.47020 * 109.88104 * 302.61683 * 3 2 1 11 11 C 1.36929 * 125.65113 * 300.61192 * 10 3 2 12 12 H 1.08001 * 120.00284 * 13.99481 * 11 10 3 13 13 C 1.38813 * 120.00024 * 194.00091 * 11 10 3 14 14 N 1.31613 * 120.00333 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99972 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47154 * 59.99942 * 15 13 11 17 17 H 1.48496 * 109.47231 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47257 * 299.99836 * 15 13 11 19 19 H 1.09004 * 109.47048 * 53.77182 * 1 2 3 20 20 H 1.08990 * 109.47541 * 173.77457 * 1 2 3 21 21 H 1.09007 * 109.46750 * 293.77765 * 1 2 3 22 22 H 1.09002 * 109.46682 * 239.99685 * 2 1 3 23 23 H 1.08993 * 109.46979 * 120.00764 * 2 1 3 24 24 H 0.96703 * 117.00225 * 179.97438 * 6 4 3 25 25 H 1.09005 * 110.72089 * 21.06944 * 7 3 2 26 26 H 1.09000 * 110.71437 * 144.15992 * 7 3 2 27 27 H 1.08997 * 111.00687 * 206.42282 * 8 7 3 28 28 H 1.09007 * 111.00350 * 82.57613 * 8 7 3 29 29 H 1.09006 * 110.36329 * 278.17188 * 9 8 7 30 30 H 1.09003 * 110.36950 * 155.84987 * 9 8 7 31 31 H 0.96995 * 120.00733 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5466 1.4531 -0.0396 5 8 4.1772 1.5469 0.9867 6 8 4.1877 1.3585 -1.2151 7 6 1.5430 2.1784 1.2621 8 6 0.2910 2.9386 0.7506 9 6 0.7237 3.3185 -0.6875 10 7 1.5042 2.1623 -1.1645 11 6 1.6982 1.8164 -2.4751 12 1 2.0879 0.8404 -2.7241 13 6 1.3941 2.7203 -3.4838 14 7 0.9188 3.9096 -3.1806 15 14 1.6594 2.2487 -5.2718 16 1 0.8348 1.0573 -5.5971 17 1 1.2613 3.3807 -6.1466 18 1 3.0936 1.9335 -5.4930 19 1 -0.3633 0.6074 -0.8290 20 1 -0.3634 -1.0215 -0.1114 21 1 -0.3633 0.4144 0.9405 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 5.1543 1.3700 -1.1901 25 1 1.2704 1.4666 2.0413 26 1 2.2989 2.8748 1.6252 27 1 0.1027 3.8293 1.3500 28 1 -0.5829 2.2873 0.7364 29 1 1.3439 4.2148 -0.6727 30 1 -0.1514 3.4720 -1.3189 31 1 0.7067 4.5414 -3.8853 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215633988.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:11 Heat of formation + Delta-G solvation = -71.515478 kcal Electronic energy + Delta-G solvation = -15462.516307 eV Core-core repulsion = 12937.550481 eV Total energy + Delta-G solvation = -2524.965826 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85340 -37.53352 -35.24474 -32.90281 -31.62037 -29.50833 -27.80668 -24.72744 -22.71159 -21.95058 -20.35221 -18.74774 -17.33382 -16.78566 -15.70589 -15.25048 -14.44329 -14.10283 -13.65267 -13.38828 -12.57028 -12.17418 -11.89140 -11.81922 -11.44307 -11.31437 -11.00244 -10.91192 -10.70657 -10.53959 -10.38807 -10.10346 -9.93255 -9.74385 -9.62267 -9.53660 -8.59672 -6.92188 -5.78685 -3.14329 3.03807 3.39977 3.44589 3.45609 3.96573 4.45544 5.13921 5.36612 5.48202 5.66474 5.76704 5.83582 5.88716 6.00333 6.28178 6.31990 6.36657 6.45256 6.51898 6.66013 6.76595 6.90082 7.03862 7.30475 7.46754 7.57054 7.79955 8.16655 8.78897 9.15090 9.73044 10.37383 11.32894 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.013809 C = 0.012164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.354994 B = 2027.233547 C = 2301.351289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.193 3.807 4 C 0.472 3.528 5 O -0.556 6.556 6 O -0.485 6.485 7 C -0.108 4.108 8 C -0.153 4.153 9 C 0.168 3.832 10 N -0.567 5.567 11 C -0.214 4.214 12 H 0.080 0.920 13 C -0.002 4.002 14 N -0.917 5.917 15 Si 0.913 3.087 16 H -0.284 1.284 17 H -0.292 1.292 18 H -0.284 1.284 19 H 0.078 0.922 20 H 0.040 0.960 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.380 0.620 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.027 0.973 30 H 0.079 0.921 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 -4.462 5.314 6.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.100 3.900 4 C 0.314 3.686 5 O -0.447 6.447 6 O -0.292 6.292 7 C -0.146 4.146 8 C -0.191 4.191 9 C 0.044 3.956 10 N -0.290 5.290 11 C -0.342 4.342 12 H 0.098 0.902 13 C -0.199 4.199 14 N -0.563 5.563 15 Si 0.743 3.257 16 H -0.211 1.211 17 H -0.218 1.218 18 H -0.210 1.210 19 H 0.097 0.903 20 H 0.060 0.940 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.070 0.930 24 H 0.235 0.765 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.618 -4.304 5.306 6.860 hybrid contribution 1.100 -0.102 -0.940 1.451 sum 0.482 -4.406 4.366 6.222 Atomic orbital electron populations 1.21731 0.94774 1.00613 1.02560 1.21797 0.97454 0.95465 1.00982 1.20466 0.83767 0.94702 0.91080 1.25715 0.93556 0.69350 0.79936 1.90568 1.69676 1.48655 1.35842 1.84972 1.24690 1.83967 1.35563 1.22451 0.98238 0.99040 0.94851 1.23218 0.96876 0.99294 0.99721 1.21565 0.96025 0.88918 0.89116 1.44650 1.55692 1.28627 1.00024 1.18937 1.37338 0.98183 0.79730 0.90177 1.24911 1.01200 0.95492 0.98263 1.69923 1.48670 1.06302 1.31446 0.86190 0.78098 0.77078 0.84300 1.21078 1.21755 1.21014 0.90309 0.94045 0.93319 0.91577 0.93031 0.76453 0.91257 0.91152 0.92020 0.91280 0.95504 0.90234 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.38 37.16 0.31 -2.03 16 2 C -0.12 -2.15 4.74 -26.73 -0.13 -2.28 16 3 C 0.19 4.01 0.77 -131.99 -0.10 3.91 16 4 C 0.47 10.22 7.14 36.01 0.26 10.47 16 5 O -0.56 -12.49 16.69 -18.75 -0.31 -12.80 16 6 O -0.49 -10.01 11.79 -39.25 -0.46 -10.47 16 7 C -0.11 -2.00 5.15 -24.90 -0.13 -2.13 16 8 C -0.15 -2.78 6.50 -24.59 -0.16 -2.94 16 9 C 0.17 3.90 5.42 -2.53 -0.01 3.89 16 10 N -0.57 -13.58 1.91 -156.62 -0.30 -13.88 16 11 C -0.21 -5.60 8.33 -15.06 -0.13 -5.73 16 12 H 0.08 2.08 7.37 -52.49 -0.39 1.69 16 13 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 14 N -0.92 -25.88 10.55 55.49 0.59 -25.30 16 15 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H 0.08 1.54 7.31 -51.93 -0.38 1.16 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.05 0.74 6.03 -51.92 -0.31 0.43 16 22 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.38 5.87 9.10 45.56 0.41 6.29 16 25 H 0.07 1.13 7.48 -51.93 -0.39 0.74 16 26 H 0.07 1.37 7.36 -51.93 -0.38 0.99 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.17 6.04 -51.93 -0.31 0.86 16 29 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 30 H 0.08 2.02 6.88 -51.93 -0.36 1.66 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 249.80 15.07 3.76 3.76 Total: -1.00 -30.06 249.80 -5.26 -35.32 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.33 Total: 3.76 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -0.18 Total: 3.02 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.29 Total: -39.17 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.78 Total: -23.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.06 -5.26 -35.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215633988.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.195 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds