Wall clock time and date at job start Mon Mar 30 2020 02:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47473 * 2 1 4 4 C 1.50699 * 109.86945 * 181.60148 * 3 2 1 5 5 O 1.20823 * 119.99818 * 264.55564 * 4 3 2 6 6 O 1.34225 * 119.99938 * 84.56944 * 4 3 2 7 7 C 1.54323 * 110.00912 * 60.50131 * 3 2 1 8 8 C 1.55150 * 102.94285 * 262.70297 * 7 3 2 9 9 C 1.54903 * 101.58405 * 324.50127 * 8 7 3 10 10 N 1.47020 * 109.88104 * 302.61683 * 3 2 1 11 11 C 1.36929 * 125.65113 * 300.61192 * 10 3 2 12 12 H 1.08001 * 120.00284 * 13.99481 * 11 10 3 13 13 C 1.38813 * 120.00024 * 194.00091 * 11 10 3 14 14 N 1.31613 * 120.00333 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99972 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47154 * 59.99942 * 15 13 11 17 17 H 1.48496 * 109.47231 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47257 * 299.99836 * 15 13 11 19 19 H 1.09004 * 109.47048 * 53.77182 * 1 2 3 20 20 H 1.08990 * 109.47541 * 173.77457 * 1 2 3 21 21 H 1.09007 * 109.46750 * 293.77765 * 1 2 3 22 22 H 1.09002 * 109.46682 * 239.99685 * 2 1 3 23 23 H 1.08993 * 109.46979 * 120.00764 * 2 1 3 24 24 H 0.96703 * 117.00225 * 179.97438 * 6 4 3 25 25 H 1.09005 * 110.72089 * 21.06944 * 7 3 2 26 26 H 1.09000 * 110.71437 * 144.15992 * 7 3 2 27 27 H 1.08997 * 111.00687 * 206.42282 * 8 7 3 28 28 H 1.09007 * 111.00350 * 82.57613 * 8 7 3 29 29 H 1.09006 * 110.36329 * 278.17188 * 9 8 7 30 30 H 1.09003 * 110.36950 * 155.84987 * 9 8 7 31 31 H 0.96995 * 120.00733 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5466 1.4531 -0.0396 5 8 4.1772 1.5469 0.9867 6 8 4.1877 1.3585 -1.2151 7 6 1.5430 2.1784 1.2621 8 6 0.2910 2.9386 0.7506 9 6 0.7237 3.3185 -0.6875 10 7 1.5042 2.1623 -1.1645 11 6 1.6982 1.8164 -2.4751 12 1 2.0879 0.8404 -2.7241 13 6 1.3941 2.7203 -3.4838 14 7 0.9188 3.9096 -3.1806 15 14 1.6594 2.2487 -5.2718 16 1 0.8348 1.0573 -5.5971 17 1 1.2613 3.3807 -6.1466 18 1 3.0936 1.9335 -5.4930 19 1 -0.3633 0.6074 -0.8290 20 1 -0.3634 -1.0215 -0.1114 21 1 -0.3633 0.4144 0.9405 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 5.1543 1.3700 -1.1901 25 1 1.2704 1.4666 2.0413 26 1 2.2989 2.8748 1.6252 27 1 0.1027 3.8293 1.3500 28 1 -0.5829 2.2873 0.7364 29 1 1.3439 4.2148 -0.6727 30 1 -0.1514 3.4720 -1.3189 31 1 0.7067 4.5414 -3.8853 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215633988.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:10 Heat of formation + Delta-G solvation = -90.862384 kcal Electronic energy + Delta-G solvation = -15463.355252 eV Core-core repulsion = 12937.550481 eV Total energy + Delta-G solvation = -2525.804771 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.52848 -39.21038 -36.94696 -34.76947 -33.18880 -31.32650 -29.38933 -26.62193 -24.39733 -23.47751 -22.05796 -20.41272 -19.11117 -18.55506 -17.29572 -17.11425 -16.18580 -15.86220 -15.39270 -14.96868 -14.16928 -13.84215 -13.64053 -13.46703 -12.91412 -12.88349 -12.76117 -12.64529 -12.42130 -12.17025 -12.05181 -11.94817 -11.52886 -11.51569 -11.27896 -11.12873 -10.58693 -8.86045 -7.81454 -5.18278 1.33162 1.50536 1.52644 1.57973 2.40044 2.54091 3.41515 3.50515 3.86238 4.07982 4.19350 4.38998 4.43579 4.54281 4.76438 4.84790 4.95185 5.03703 5.06231 5.19477 5.31209 5.45155 5.56268 5.65055 5.68683 5.72905 5.80702 6.23447 7.09871 7.22586 7.77729 8.41697 9.29068 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029896 B = 0.013809 C = 0.012164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.354994 B = 2027.233547 C = 2301.351289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C 0.180 3.820 4 C 0.470 3.530 5 O -0.566 6.566 6 O -0.498 6.498 7 C -0.102 4.102 8 C -0.134 4.134 9 C 0.172 3.828 10 N -0.581 5.581 11 C -0.207 4.207 12 H 0.079 0.921 13 C -0.059 4.059 14 N -0.948 5.948 15 Si 0.969 3.031 16 H -0.276 1.276 17 H -0.299 1.299 18 H -0.282 1.282 19 H 0.045 0.955 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.402 0.598 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.087 0.913 29 H -0.010 1.010 30 H 0.050 0.950 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.450 -5.936 6.559 8.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C 0.089 3.911 4 C 0.313 3.687 5 O -0.458 6.458 6 O -0.307 6.307 7 C -0.140 4.140 8 C -0.172 4.172 9 C 0.047 3.953 10 N -0.304 5.304 11 C -0.336 4.336 12 H 0.097 0.903 13 C -0.252 4.252 14 N -0.597 5.597 15 Si 0.799 3.201 16 H -0.202 1.202 17 H -0.226 1.226 18 H -0.208 1.208 19 H 0.065 0.935 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.261 0.739 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.009 0.991 30 H 0.068 0.932 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.747 -5.812 6.569 8.803 hybrid contribution 1.233 0.302 -1.278 1.802 sum 0.486 -5.510 5.291 7.654 Atomic orbital electron populations 1.21657 0.93462 1.01584 1.02259 1.21775 0.98497 0.93456 1.01501 1.20838 0.83254 0.96198 0.90839 1.25716 0.94012 0.69047 0.79900 1.90561 1.70007 1.49173 1.36054 1.84892 1.26800 1.83684 1.35327 1.22483 0.97696 0.99295 0.94508 1.23091 0.97337 1.00623 0.96181 1.21351 0.94188 0.87828 0.91914 1.44739 1.56489 1.28926 1.00294 1.19114 1.35567 0.97839 0.81045 0.90277 1.25586 1.02199 0.95776 1.01622 1.70115 1.50631 1.07204 1.31714 0.85291 0.77906 0.76602 0.80343 1.20185 1.22562 1.20825 0.93550 0.91807 0.91276 0.93005 0.90539 0.73889 0.87905 0.92261 0.89688 0.89452 0.99144 0.93173 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.38 71.98 0.60 -3.43 16 2 C -0.11 -3.82 4.74 30.60 0.15 -3.68 16 3 C 0.18 7.18 0.77 3.21 0.00 7.18 16 4 C 0.47 19.64 7.14 71.24 0.51 20.15 16 5 O -0.57 -24.31 16.69 21.97 0.37 -23.95 16 6 O -0.50 -20.00 11.79 -51.37 -0.61 -20.61 16 7 C -0.10 -3.49 5.15 31.78 0.16 -3.33 16 8 C -0.13 -4.59 6.50 31.98 0.21 -4.39 16 9 C 0.17 8.06 5.42 86.85 0.47 8.53 16 10 N -0.58 -27.74 1.91 -649.44 -1.24 -28.98 16 11 C -0.21 -10.87 8.33 84.04 0.70 -10.17 16 12 H 0.08 4.09 7.37 -2.91 -0.02 4.07 16 13 C -0.06 -3.22 5.47 84.86 0.46 -2.76 16 14 N -0.95 -55.17 10.55 21.65 0.23 -54.94 16 15 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H 0.05 1.73 7.31 -2.38 -0.02 1.71 16 20 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 21 H 0.07 1.81 6.03 -2.38 -0.01 1.79 16 22 H 0.05 1.89 7.69 -2.39 -0.02 1.87 16 23 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.40 11.88 9.10 -74.06 -0.67 11.21 16 25 H 0.10 2.86 7.48 -2.38 -0.02 2.84 16 26 H 0.06 2.17 7.36 -2.39 -0.02 2.16 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.09 2.70 6.04 -2.38 -0.01 2.68 16 29 H -0.01 -0.51 8.07 -2.38 -0.02 -0.53 16 30 H 0.05 2.62 6.88 -2.39 -0.02 2.60 16 31 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -64.88 249.80 4.51 -60.37 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.46 Total: 13.01 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 3.27 Total: 8.11 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -1.01 Total: -83.92 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.24 Total: -44.55 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -64.88 4.51 -60.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215633988.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.489 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds