Wall clock time and date at job start Mon Mar 30 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47302 * 2 1 4 4 C 1.53006 * 109.46850 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46806 * 180.02562 * 4 3 2 6 6 C 1.47094 * 125.56102 * 270.00249 * 5 4 3 7 7 C 1.54090 * 103.77691 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.52151 * 241.36615 * 7 6 5 9 9 C 1.50699 * 110.52441 * 118.62792 * 7 6 5 10 10 H 1.08006 * 119.99931 * 359.97438 * 9 7 6 11 11 C 1.37875 * 120.00421 * 179.97438 * 9 7 6 12 12 N 1.31514 * 119.99802 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00188 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47046 * 90.00221 * 13 11 9 15 15 H 1.48497 * 109.47349 * 210.00356 * 13 11 9 16 16 H 1.48506 * 109.47129 * 330.00293 * 13 11 9 17 17 O 1.45705 * 104.00976 * 359.79889 * 7 6 5 18 18 C 1.33775 * 109.47563 * 0.34094 * 17 7 6 19 19 O 1.21513 * 123.07329 * 179.89652 * 18 17 7 20 20 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46579 * 300.00185 * 1 2 3 22 22 H 1.08998 * 109.47071 * 59.99134 * 1 2 3 23 23 H 1.08998 * 109.46860 * 240.00144 * 2 1 3 24 24 H 1.08998 * 109.47246 * 120.00340 * 2 1 3 25 25 H 1.09004 * 109.46729 * 60.00520 * 3 2 1 26 26 H 1.08998 * 109.47247 * 300.00339 * 3 2 1 27 27 H 1.08998 * 109.47201 * 60.00213 * 4 3 2 28 28 H 1.08998 * 109.47358 * 300.00131 * 4 3 2 29 29 H 1.08998 * 110.56221 * 298.54675 * 6 5 4 30 30 H 1.08993 * 110.56276 * 61.40581 * 6 5 4 31 31 H 0.96999 * 119.99830 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3431 3.6308 -1.1963 7 6 4.8197 4.9797 -0.6238 8 1 4.1534 5.7840 -0.9357 9 6 6.2347 5.2667 -1.0558 10 1 6.7617 4.5616 -1.6817 11 6 6.8565 6.4291 -0.6521 12 7 6.2149 7.2874 0.1104 13 14 8.6101 6.7851 -1.1882 14 1 8.5934 7.5330 -2.4709 15 1 9.2898 7.5995 -0.1491 16 1 9.3413 5.5054 -1.3709 17 8 4.7497 4.7948 0.8197 18 6 4.3182 3.5578 1.0905 19 8 4.1703 3.1399 2.2219 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6768 1.9563 0.8901 26 1 1.6767 1.9564 -0.8899 27 1 3.9330 0.9287 -0.8909 28 1 3.9338 0.9284 0.8891 29 1 5.1300 3.1682 -1.7920 30 1 3.4398 3.7652 -1.7912 31 1 6.6525 8.1050 0.3947 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219012440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:47 Heat of formation + Delta-G solvation = -93.001821 kcal Electronic energy + Delta-G solvation = -14370.873992 eV Core-core repulsion = 11844.976448 eV Total energy + Delta-G solvation = -2525.897544 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22903 -36.23277 -35.84917 -33.63559 -32.83722 -29.77245 -28.24063 -25.04237 -23.69796 -21.73492 -21.14872 -19.77646 -17.16312 -16.35578 -15.86046 -15.35060 -15.00709 -14.56456 -13.90368 -13.88258 -12.99332 -12.90441 -12.74742 -12.46811 -12.24464 -11.65274 -11.22936 -11.13498 -11.05878 -10.97636 -10.84003 -10.49776 -10.48755 -9.93827 -9.49378 -8.98544 -8.76092 -8.11570 -6.29968 -4.49487 3.17967 3.26288 3.29122 3.46006 3.82611 4.22356 4.76713 4.93926 4.96738 5.12755 5.23727 5.37064 5.60209 5.65332 5.67404 5.77106 5.79924 5.91297 5.94007 6.11290 6.17076 6.25835 6.41385 6.72805 7.06532 7.28576 7.59606 7.80035 8.50426 8.76939 9.09481 9.26798 10.76733 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062057 B = 0.006827 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.091734 B = 4100.445995 C = 4259.568905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.149 3.851 5 N -0.641 5.641 6 C 0.076 3.924 7 C 0.196 3.804 8 H 0.075 0.925 9 C -0.551 4.551 10 H 0.072 0.928 11 C 0.081 3.919 12 N -0.854 5.854 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.270 1.270 17 O -0.314 6.314 18 C 0.635 3.365 19 O -0.567 6.567 20 H 0.051 0.949 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -9.951 -4.916 12.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.178 4.178 4 C 0.027 3.973 5 N -0.389 5.389 6 C -0.047 4.047 7 C 0.143 3.857 8 H 0.093 0.907 9 C -0.588 4.588 10 H 0.090 0.910 11 C -0.128 4.128 12 N -0.488 5.488 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.195 1.195 17 O -0.222 6.222 18 C 0.391 3.609 19 O -0.457 6.457 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.637 -9.761 -4.098 12.494 hybrid contribution 0.877 0.221 -0.417 0.996 sum -5.760 -9.540 -4.514 12.023 Atomic orbital electron populations 1.21757 0.95912 1.01279 1.01898 1.21445 0.95877 0.96574 1.01994 1.22056 0.96095 0.96859 1.02777 1.21100 0.93139 0.80470 1.02571 1.48125 1.69329 1.14232 1.07226 1.22987 1.00040 0.93368 0.88303 1.21527 0.98922 0.91362 0.73845 0.90701 1.21195 0.98295 1.05797 1.33466 0.90953 1.25159 0.98801 0.95430 0.93434 1.70005 1.37489 1.09776 1.31563 0.86402 0.83405 0.78677 0.78444 1.20092 1.20746 1.19467 1.87670 1.77061 1.26221 1.31264 1.19021 0.75723 0.81350 0.84780 1.90857 1.60061 1.73506 1.21313 0.92941 0.92706 0.92829 0.92014 0.91834 0.91426 0.91844 0.90796 0.90343 0.90280 0.91716 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.12 -1.27 5.93 -26.73 -0.16 -1.43 16 3 C -0.14 -1.86 5.54 -26.73 -0.15 -2.01 16 4 C 0.15 2.29 6.01 -4.04 -0.02 2.27 16 5 N -0.64 -12.85 2.96 -178.84 -0.53 -13.38 16 6 C 0.08 1.47 7.33 -3.15 -0.02 1.44 16 7 C 0.20 4.81 3.61 -27.31 -0.10 4.71 16 8 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 9 C -0.55 -14.46 8.83 -34.44 -0.30 -14.76 16 10 H 0.07 1.80 7.38 -52.48 -0.39 1.41 16 11 C 0.08 2.17 5.44 -17.82 -0.10 2.07 16 12 N -0.85 -24.41 13.11 55.43 0.73 -23.68 16 13 Si 0.90 20.37 29.54 -169.99 -5.02 15.34 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 17 O -0.31 -8.70 10.57 -37.84 -0.40 -9.10 16 18 C 0.63 15.96 8.85 53.71 0.48 16.44 16 19 O -0.57 -15.45 17.54 -19.12 -0.34 -15.78 16 20 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 29 H 0.08 1.44 7.45 -51.93 -0.39 1.05 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 268.99 15.07 4.05 4.05 Total: -1.00 -31.58 268.99 -6.06 -37.64 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.55 Total: -2.76 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -0.01 Total: 7.66 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.20 Total: -37.06 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.74 Total: -24.89 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.58 -6.06 -37.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219012440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.362 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds