Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47302 * 2 1 4 4 C 1.53006 * 109.46850 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46806 * 180.02562 * 4 3 2 6 6 C 1.47094 * 125.56102 * 270.00249 * 5 4 3 7 7 C 1.54090 * 103.77691 * 179.97438 * 6 5 4 8 8 H 1.08997 * 110.52151 * 241.36615 * 7 6 5 9 9 C 1.50699 * 110.52441 * 118.62792 * 7 6 5 10 10 H 1.08006 * 119.99931 * 359.97438 * 9 7 6 11 11 C 1.37875 * 120.00421 * 179.97438 * 9 7 6 12 12 N 1.31514 * 119.99802 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00188 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47046 * 90.00221 * 13 11 9 15 15 H 1.48497 * 109.47349 * 210.00356 * 13 11 9 16 16 H 1.48506 * 109.47129 * 330.00293 * 13 11 9 17 17 O 1.45705 * 104.00976 * 359.79889 * 7 6 5 18 18 C 1.33775 * 109.47563 * 0.34094 * 17 7 6 19 19 O 1.21513 * 123.07329 * 179.89652 * 18 17 7 20 20 H 1.08998 * 109.47089 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46579 * 300.00185 * 1 2 3 22 22 H 1.08998 * 109.47071 * 59.99134 * 1 2 3 23 23 H 1.08998 * 109.46860 * 240.00144 * 2 1 3 24 24 H 1.08998 * 109.47246 * 120.00340 * 2 1 3 25 25 H 1.09004 * 109.46729 * 60.00520 * 3 2 1 26 26 H 1.08998 * 109.47247 * 300.00339 * 3 2 1 27 27 H 1.08998 * 109.47201 * 60.00213 * 4 3 2 28 28 H 1.08998 * 109.47358 * 300.00131 * 4 3 2 29 29 H 1.08998 * 110.56221 * 298.54675 * 6 5 4 30 30 H 1.08993 * 110.56276 * 61.40581 * 6 5 4 31 31 H 0.96999 * 119.99830 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3431 3.6308 -1.1963 7 6 4.8197 4.9797 -0.6238 8 1 4.1534 5.7840 -0.9357 9 6 6.2347 5.2667 -1.0558 10 1 6.7617 4.5616 -1.6817 11 6 6.8565 6.4291 -0.6521 12 7 6.2149 7.2874 0.1104 13 14 8.6101 6.7851 -1.1882 14 1 8.5934 7.5330 -2.4709 15 1 9.2898 7.5995 -0.1491 16 1 9.3413 5.5054 -1.3709 17 8 4.7497 4.7948 0.8197 18 6 4.3182 3.5578 1.0905 19 8 4.1703 3.1399 2.2219 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6768 1.9563 0.8901 26 1 1.6767 1.9564 -0.8899 27 1 3.9330 0.9287 -0.8909 28 1 3.9338 0.9284 0.8891 29 1 5.1300 3.1682 -1.7920 30 1 3.4398 3.7652 -1.7912 31 1 6.6525 8.1050 0.3947 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219012440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = -113.305104 kcal Electronic energy + Delta-G solvation = -14371.754408 eV Core-core repulsion = 11844.976448 eV Total energy + Delta-G solvation = -2526.777960 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.07854 -38.09706 -37.28269 -34.99165 -34.86386 -31.32429 -29.71689 -26.82688 -24.98839 -23.59110 -22.13060 -21.49317 -19.09100 -18.11401 -17.56720 -17.08231 -16.43806 -16.29946 -15.47733 -15.01178 -14.78546 -14.65851 -13.93601 -13.87760 -13.62358 -13.21181 -12.80383 -12.76765 -12.37104 -12.27427 -12.19510 -11.97232 -11.76208 -11.51064 -11.35959 -10.99524 -10.76364 -9.71211 -8.32061 -6.58459 1.41816 1.43973 1.55067 1.86433 1.89949 2.34432 2.83613 3.40451 3.83448 3.85543 3.98089 4.22782 4.26083 4.38612 4.56379 4.62264 4.74294 4.76400 4.96687 5.07229 5.08553 5.22065 5.27132 5.41501 5.47327 5.56966 5.69001 5.83467 6.52623 6.85438 7.19301 7.24801 8.75772 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062057 B = 0.006827 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.091734 B = 4100.445995 C = 4259.568905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.132 4.132 4 C 0.140 3.860 5 N -0.626 5.626 6 C 0.089 3.911 7 C 0.181 3.819 8 H 0.060 0.940 9 C -0.564 4.564 10 H 0.086 0.914 11 C 0.024 3.976 12 N -0.899 5.899 13 Si 0.974 3.026 14 H -0.260 1.260 15 H -0.288 1.288 16 H -0.262 1.262 17 O -0.354 6.354 18 C 0.623 3.377 19 O -0.602 6.602 20 H 0.068 0.932 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.444 -11.692 -7.045 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.171 4.171 4 C 0.021 3.979 5 N -0.373 5.373 6 C -0.033 4.033 7 C 0.129 3.871 8 H 0.078 0.922 9 C -0.600 4.600 10 H 0.104 0.896 11 C -0.180 4.180 12 N -0.535 5.535 13 Si 0.797 3.203 14 H -0.184 1.184 15 H -0.214 1.214 16 H -0.186 1.186 17 O -0.263 6.263 18 C 0.379 3.621 19 O -0.494 6.494 20 H 0.087 0.913 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.132 0.868 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.457 -11.540 -6.276 14.637 hybrid contribution 0.761 0.731 0.240 1.082 sum -5.697 -10.809 -6.036 13.628 Atomic orbital electron populations 1.21761 0.95197 1.02275 1.01640 1.21426 0.96459 0.94450 1.03010 1.21986 0.94515 0.98812 1.01742 1.21543 0.94469 0.77881 1.04047 1.48263 1.67836 1.15408 1.05826 1.22987 1.02284 0.90312 0.87761 1.21661 0.98432 0.94100 0.72955 0.92244 1.21665 0.99202 1.05936 1.33194 0.89618 1.26126 1.03145 0.95362 0.93374 1.70145 1.39459 1.10483 1.33445 0.85322 0.78001 0.78671 0.78264 1.18444 1.21374 1.18614 1.87595 1.77639 1.28057 1.33036 1.19231 0.76041 0.81204 0.85578 1.90807 1.61673 1.73995 1.22961 0.91333 0.93807 0.92321 0.89798 0.92007 0.94482 0.90878 0.86785 0.91329 0.88241 0.87914 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.80 16 2 C -0.12 -2.10 5.93 30.60 0.18 -1.92 16 3 C -0.13 -3.26 5.54 30.60 0.17 -3.09 16 4 C 0.14 3.96 6.01 86.38 0.52 4.48 16 5 N -0.63 -24.11 2.96 -951.45 -2.82 -26.93 16 6 C 0.09 3.20 7.33 86.63 0.64 3.83 16 7 C 0.18 8.87 3.61 30.22 0.11 8.98 16 8 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 9 C -0.56 -29.24 8.83 25.60 0.23 -29.02 16 10 H 0.09 4.10 7.38 -2.91 -0.02 4.08 16 11 C 0.02 1.30 5.44 84.65 0.46 1.76 16 12 N -0.90 -52.56 13.11 21.45 0.28 -52.28 16 13 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 14 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 15 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 17 O -0.35 -20.12 10.57 -47.35 -0.50 -20.62 16 18 C 0.62 31.72 8.85 129.91 1.15 32.87 16 19 O -0.60 -33.61 17.54 19.64 0.34 -33.26 16 20 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 2.10 7.93 -2.39 -0.02 2.08 16 29 H 0.10 3.23 7.45 -2.39 -0.02 3.21 16 30 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -70.01 268.99 4.59 -65.42 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.10 Total: 8.05 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 4.16 Total: 16.11 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.54 Total: -79.21 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.16 Total: -53.88 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -70.01 4.59 -65.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219012440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.886 kcal (2) G-P(sol) polarization free energy of solvation -70.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds