Wall clock time and date at job start Mon Mar 30 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 C 1.52999 * 109.47100 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47171 * 179.97438 * 4 3 2 6 6 C 1.47091 * 125.55743 * 90.00251 * 5 4 3 7 7 C 1.54092 * 103.77517 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.52171 * 118.62905 * 7 6 5 9 9 C 1.50701 * 110.52048 * 241.22685 * 7 6 5 10 10 H 1.08003 * 120.00029 * 358.06905 * 9 7 6 11 11 C 1.37878 * 120.00193 * 178.06668 * 9 7 6 12 12 N 1.31512 * 120.00070 * 180.02562 * 11 9 7 13 13 Si 1.86809 * 119.99799 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.46943 * 89.99452 * 13 11 9 15 15 H 1.48499 * 109.46958 * 209.99857 * 13 11 9 16 16 H 1.48504 * 109.47018 * 329.99791 * 13 11 9 17 17 O 1.45699 * 104.00840 * 359.97438 * 7 6 5 18 18 C 1.33772 * 109.47878 * 0.02562 * 17 7 6 19 19 O 1.21507 * 123.07582 * 179.97438 * 18 17 7 20 20 H 1.09005 * 109.47203 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46886 * 299.99491 * 1 2 3 22 22 H 1.08995 * 109.47070 * 59.99802 * 1 2 3 23 23 H 1.08996 * 109.47047 * 239.99900 * 2 1 3 24 24 H 1.09003 * 109.47242 * 119.99900 * 2 1 3 25 25 H 1.09001 * 109.47336 * 60.00486 * 3 2 1 26 26 H 1.08995 * 109.47321 * 300.00044 * 3 2 1 27 27 H 1.09004 * 109.47236 * 59.99618 * 4 3 2 28 28 H 1.09003 * 109.47242 * 299.99900 * 4 3 2 29 29 H 1.09005 * 110.56842 * 61.44953 * 6 5 4 30 30 H 1.09001 * 110.56590 * 298.59427 * 6 5 4 31 31 H 0.97004 * 119.99570 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.3440 3.6305 1.1950 7 6 4.8201 4.9796 0.6226 8 1 4.1540 5.7838 0.9353 9 6 6.2342 5.2680 1.0564 10 1 6.7500 4.5791 1.7089 11 6 6.8696 6.4113 0.6201 12 7 8.1038 6.6626 0.9983 13 14 5.9772 7.6031 -0.5081 14 1 5.2575 8.6131 0.3086 15 1 6.9619 8.2861 -1.3851 16 1 5.0028 6.8574 -1.3447 17 8 4.7540 4.7933 -0.8209 18 6 4.3174 3.5582 -1.0917 19 8 4.1691 3.1405 -2.2231 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9563 -0.8899 27 1 3.9330 0.9287 -0.8908 28 1 3.9337 0.9285 0.8891 29 1 5.1314 3.1677 1.7900 30 1 3.4412 3.7647 1.7909 31 1 8.5507 7.4672 0.6916 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219012523.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:48 Heat of formation + Delta-G solvation = -107.877365 kcal Electronic energy + Delta-G solvation = -14449.884026 eV Core-core repulsion = 11923.341430 eV Total energy + Delta-G solvation = -2526.542596 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.21376 -38.21585 -37.32500 -35.05302 -34.89263 -31.59556 -29.94928 -26.88662 -25.01089 -23.37768 -22.16565 -21.63631 -19.31253 -18.25607 -17.70533 -17.23638 -16.42784 -16.19724 -15.56095 -15.10712 -15.01484 -14.63629 -14.16093 -13.89106 -13.76137 -13.27098 -12.86302 -12.81778 -12.36398 -12.28510 -12.13909 -11.92661 -11.88770 -11.46781 -11.34108 -11.09645 -10.88668 -9.74600 -8.48345 -6.65972 1.32059 1.33345 1.60599 1.80378 1.86991 2.31146 2.69061 3.24222 3.72692 3.82615 3.96882 4.22381 4.23910 4.29368 4.56043 4.61131 4.71062 4.75509 4.92382 4.97895 5.07282 5.10636 5.27358 5.30201 5.41574 5.47434 5.64326 5.99273 6.46967 6.66101 7.11550 7.16215 8.63990 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057031 B = 0.007536 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.840627 B = 3714.802175 C = 3878.069735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.130 4.130 4 C 0.139 3.861 5 N -0.625 5.625 6 C 0.094 3.906 7 C 0.150 3.850 8 H 0.095 0.905 9 C -0.545 4.545 10 H 0.063 0.937 11 C 0.041 3.959 12 N -0.918 5.918 13 Si 0.926 3.074 14 H -0.254 1.254 15 H -0.288 1.288 16 H -0.237 1.237 17 O -0.359 6.359 18 C 0.626 3.374 19 O -0.595 6.595 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.538 -9.712 3.009 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.169 4.169 4 C 0.020 3.980 5 N -0.372 5.372 6 C -0.028 4.028 7 C 0.097 3.903 8 H 0.113 0.887 9 C -0.581 4.581 10 H 0.081 0.919 11 C -0.162 4.162 12 N -0.555 5.555 13 Si 0.750 3.250 14 H -0.178 1.178 15 H -0.214 1.214 16 H -0.161 1.161 17 O -0.270 6.270 18 C 0.382 3.618 19 O -0.487 6.487 20 H 0.085 0.915 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.397 -9.624 2.327 16.659 hybrid contribution 0.389 0.799 -0.571 1.056 sum -13.009 -8.825 1.756 15.817 Atomic orbital electron populations 1.21756 0.95132 1.02230 1.01714 1.21430 0.96502 0.94657 1.02908 1.21973 0.94190 0.98718 1.02031 1.21555 0.94663 0.77811 1.04007 1.48273 1.67662 1.15443 1.05834 1.22866 1.02564 0.89646 0.87762 1.22070 0.97937 0.96721 0.73569 0.88730 1.21342 0.98421 1.07559 1.30785 0.91912 1.25832 0.95167 0.99504 0.95711 1.69995 1.13197 1.27514 1.44807 0.86064 0.79903 0.79115 0.79949 1.17826 1.21406 1.16093 1.87678 1.78281 1.28809 1.32238 1.19141 0.76000 0.81105 0.85529 1.90837 1.61284 1.73741 1.22841 0.91525 0.92248 0.93660 0.92097 0.90017 0.90581 0.94086 0.91321 0.87090 0.89073 0.86666 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.91 71.98 0.71 -1.59 16 2 C -0.12 -1.97 5.93 30.59 0.18 -1.79 16 3 C -0.13 -2.92 5.54 30.59 0.17 -2.75 16 4 C 0.14 3.69 6.01 86.38 0.52 4.21 16 5 N -0.63 -22.32 2.96 -951.44 -2.82 -25.14 16 6 C 0.09 3.12 7.33 86.64 0.64 3.75 16 7 C 0.15 6.50 3.06 30.22 0.09 6.59 16 8 H 0.10 3.71 7.57 -2.39 -0.02 3.69 16 9 C -0.54 -28.77 9.41 25.60 0.24 -28.53 16 10 H 0.06 3.54 7.63 -2.91 -0.02 3.52 16 11 C 0.04 2.29 5.47 84.66 0.46 2.75 16 12 N -0.92 -54.28 13.96 21.45 0.30 -53.98 16 13 Si 0.93 43.47 27.07 68.60 1.86 45.33 16 14 H -0.25 -10.88 7.11 99.48 0.71 -10.18 16 15 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 16 H -0.24 -11.39 5.47 99.48 0.54 -10.85 16 17 O -0.36 -17.85 8.04 -47.32 -0.38 -18.23 16 18 C 0.63 29.13 8.85 129.91 1.15 30.28 16 19 O -0.60 -30.82 17.54 19.66 0.34 -30.48 16 20 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 21 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 22 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 2.00 7.93 -2.38 -0.02 1.98 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.09 2.98 7.46 -2.38 -0.02 2.97 16 30 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -69.24 262.93 4.40 -64.84 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.94 Total: 4.75 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 4.16 Total: 12.92 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.52 Total: -79.12 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -0.04 Total: -48.71 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.86 Total: 45.33 kcal Total: -69.24 4.40 -64.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219012523.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.036 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds