Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46797 * 2 1 4 4 C 1.52999 * 109.47149 * 119.99546 * 2 1 3 5 5 N 1.46507 * 109.46749 * 65.00384 * 4 2 1 6 6 C 1.47093 * 125.55908 * 90.00246 * 5 4 2 7 7 C 1.54086 * 103.90691 * 180.02562 * 6 5 4 8 8 H 1.09003 * 110.52206 * 241.29739 * 7 6 5 9 9 C 1.50700 * 110.52322 * 118.69257 * 7 6 5 10 10 H 1.08005 * 119.99722 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00138 * 179.97438 * 9 7 6 12 12 N 1.31513 * 120.00338 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99965 * 180.02562 * 11 9 7 14 14 H 1.48510 * 109.46742 * 90.00700 * 13 11 9 15 15 H 1.48496 * 109.47312 * 210.00207 * 13 11 9 16 16 H 1.48500 * 109.47127 * 330.00759 * 13 11 9 17 17 O 1.45708 * 104.00962 * 359.92488 * 7 6 5 18 18 C 1.33768 * 109.47602 * 359.97438 * 17 7 6 19 19 O 1.21505 * 123.07372 * 180.02562 * 18 17 7 20 20 H 1.09008 * 109.46973 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47584 * 300.00233 * 1 2 3 22 22 H 1.09003 * 109.46628 * 60.00713 * 1 2 3 23 23 H 1.08998 * 109.47584 * 239.99767 * 2 1 3 24 24 H 1.09005 * 109.46655 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.46891 * 299.99528 * 3 2 1 26 26 H 1.08999 * 109.47346 * 60.00104 * 3 2 1 27 27 H 1.08999 * 109.47108 * 305.00513 * 4 2 1 28 28 H 1.09003 * 109.47450 * 184.99818 * 4 2 1 29 29 H 1.09002 * 110.56672 * 61.39154 * 6 5 4 30 30 H 1.08999 * 110.56403 * 298.68226 * 6 5 4 31 31 H 0.97000 * 120.00605 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4487 -3.2142 0.5905 7 6 1.5837 -4.4719 0.8014 8 1 2.1108 -5.1989 1.4192 9 6 1.2062 -5.0817 -0.5240 10 1 1.5442 -4.6270 -1.4435 11 6 0.4302 -6.2207 -0.5627 12 7 0.0191 -6.7747 0.5570 13 14 -0.0371 -6.9771 -2.2056 14 1 0.9952 -7.9666 -2.6065 15 1 -1.3519 -7.6562 -2.0818 16 1 -0.1261 -5.9100 -3.2344 17 8 0.4017 -3.9750 1.4934 18 6 0.5144 -2.6548 1.6772 19 8 -0.3360 -1.9876 2.2322 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6053 -0.2616 2.1370 28 1 3.1263 -0.6443 1.2952 29 1 3.4045 -3.3165 1.1044 30 1 2.6045 -3.0303 -0.4725 31 1 -0.5272 -7.5758 0.5298 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219012633.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = -89.277322 kcal Electronic energy + Delta-G solvation = -14813.594307 eV Core-core repulsion = 12287.858269 eV Total energy + Delta-G solvation = -2525.736037 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26112 -36.52135 -35.86397 -33.17502 -32.83494 -29.13568 -26.90642 -26.37784 -24.65620 -21.74371 -20.59378 -19.49354 -17.29409 -16.27732 -15.74478 -15.26897 -14.72099 -14.50552 -13.87425 -13.73159 -13.00462 -12.89962 -12.34119 -12.11208 -12.02958 -11.83459 -11.51136 -11.03817 -10.91816 -10.84695 -10.66299 -10.51484 -10.41526 -9.92365 -9.46784 -8.96624 -8.75792 -8.07380 -6.29907 -4.49184 3.17649 3.26086 3.28863 3.47449 3.84878 4.22376 4.77421 4.99009 5.09359 5.26200 5.34070 5.52039 5.61664 5.72319 5.79830 5.87890 6.02780 6.04408 6.09656 6.20272 6.28524 6.52493 6.68708 6.77577 7.07345 7.31282 7.59738 7.80405 8.50973 8.77842 9.11286 9.27015 10.76773 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039796 B = 0.009003 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.427987 B = 3109.203930 C = 3318.573090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C -0.142 4.142 4 C 0.155 3.845 5 N -0.641 5.641 6 C 0.076 3.924 7 C 0.196 3.804 8 H 0.075 0.925 9 C -0.550 4.550 10 H 0.072 0.928 11 C 0.081 3.919 12 N -0.854 5.854 13 Si 0.903 3.097 14 H -0.275 1.275 15 H -0.282 1.282 16 H -0.270 1.270 17 O -0.314 6.314 18 C 0.635 3.365 19 O -0.563 6.563 20 H 0.061 0.939 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.413 9.490 -2.031 11.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C -0.200 4.200 4 C 0.033 3.967 5 N -0.389 5.389 6 C -0.048 4.048 7 C 0.144 3.856 8 H 0.093 0.907 9 C -0.586 4.586 10 H 0.090 0.910 11 C -0.128 4.128 12 N -0.489 5.489 13 Si 0.729 3.271 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.195 1.195 17 O -0.222 6.222 18 C 0.392 3.608 19 O -0.453 6.453 20 H 0.080 0.920 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.698 9.481 -1.579 11.174 hybrid contribution -0.131 -0.450 -0.960 1.068 sum 5.567 9.032 -2.540 10.909 Atomic orbital electron populations 1.21769 0.94382 1.02816 1.00773 1.21574 0.97205 0.95794 0.99045 1.21766 1.00538 0.95847 1.01835 1.21169 0.98954 0.78514 0.98109 1.48176 1.21233 1.07911 1.61576 1.22971 0.95181 0.87674 0.98949 1.21512 0.80185 0.89992 0.93925 0.90729 1.21188 1.36199 1.10452 0.90808 0.90990 1.25153 0.94343 0.96144 0.97167 1.70001 1.32583 1.19650 1.26628 0.86422 0.78192 0.79367 0.83072 1.20094 1.20744 1.19467 1.87671 1.45561 1.17474 1.71531 1.19072 0.81537 0.82880 0.77346 1.90860 1.44170 1.61438 1.48822 0.92006 0.92634 0.93614 0.91027 0.92828 0.92637 0.92630 0.90356 0.90908 0.91731 0.90416 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.36 37.16 0.31 -2.00 16 2 C -0.12 -1.66 3.13 -90.62 -0.28 -1.94 16 3 C -0.14 -1.54 9.19 37.16 0.34 -1.19 16 4 C 0.15 2.38 5.46 -4.04 -0.02 2.35 16 5 N -0.64 -12.66 2.81 -178.74 -0.50 -13.16 16 6 C 0.08 1.45 7.32 -3.15 -0.02 1.42 16 7 C 0.20 4.80 3.61 -27.32 -0.10 4.70 16 8 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 9 C -0.55 -14.38 8.82 -34.44 -0.30 -14.69 16 10 H 0.07 1.79 7.38 -52.48 -0.39 1.40 16 11 C 0.08 2.17 5.44 -17.82 -0.10 2.07 16 12 N -0.85 -24.37 13.11 55.43 0.73 -23.65 16 13 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 14 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 O -0.31 -8.62 10.57 -37.82 -0.40 -9.02 16 18 C 0.63 15.63 7.52 53.85 0.41 16.04 16 19 O -0.56 -14.85 16.40 -19.11 -0.31 -15.16 16 20 H 0.06 1.27 6.15 -51.92 -0.32 0.95 16 21 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.24 7.94 -51.93 -0.41 0.83 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 1.42 7.45 -51.93 -0.39 1.03 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 263.12 15.07 3.97 3.97 Total: -1.00 -31.00 263.12 -5.76 -36.76 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.45 Total: -1.86 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 0.23 Total: 6.76 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.23 Total: -36.81 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.71 Total: -24.18 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.00 -5.76 -36.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219012633.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.520 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds