Wall clock time and date at job start Mon Mar 30 2020 03:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46797 * 2 1 4 4 C 1.52999 * 109.47149 * 119.99546 * 2 1 3 5 5 N 1.46507 * 109.46749 * 65.00384 * 4 2 1 6 6 C 1.47093 * 125.55908 * 90.00246 * 5 4 2 7 7 C 1.54086 * 103.90691 * 180.02562 * 6 5 4 8 8 H 1.09003 * 110.52206 * 241.29739 * 7 6 5 9 9 C 1.50700 * 110.52322 * 118.69257 * 7 6 5 10 10 H 1.08005 * 119.99722 * 0.02562 * 9 7 6 11 11 C 1.37875 * 120.00138 * 179.97438 * 9 7 6 12 12 N 1.31513 * 120.00338 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99965 * 180.02562 * 11 9 7 14 14 H 1.48510 * 109.46742 * 90.00700 * 13 11 9 15 15 H 1.48496 * 109.47312 * 210.00207 * 13 11 9 16 16 H 1.48500 * 109.47127 * 330.00759 * 13 11 9 17 17 O 1.45708 * 104.00962 * 359.92488 * 7 6 5 18 18 C 1.33768 * 109.47602 * 359.97438 * 17 7 6 19 19 O 1.21505 * 123.07372 * 180.02562 * 18 17 7 20 20 H 1.09008 * 109.46973 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47584 * 300.00233 * 1 2 3 22 22 H 1.09003 * 109.46628 * 60.00713 * 1 2 3 23 23 H 1.08998 * 109.47584 * 239.99767 * 2 1 3 24 24 H 1.09005 * 109.46655 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.46891 * 299.99528 * 3 2 1 26 26 H 1.08999 * 109.47346 * 60.00104 * 3 2 1 27 27 H 1.08999 * 109.47108 * 305.00513 * 4 2 1 28 28 H 1.09003 * 109.47450 * 184.99818 * 4 2 1 29 29 H 1.09002 * 110.56672 * 61.39154 * 6 5 4 30 30 H 1.08999 * 110.56403 * 298.68226 * 6 5 4 31 31 H 0.97000 * 120.00605 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4487 -3.2142 0.5905 7 6 1.5837 -4.4719 0.8014 8 1 2.1108 -5.1989 1.4192 9 6 1.2062 -5.0817 -0.5240 10 1 1.5442 -4.6270 -1.4435 11 6 0.4302 -6.2207 -0.5627 12 7 0.0191 -6.7747 0.5570 13 14 -0.0371 -6.9771 -2.2056 14 1 0.9952 -7.9666 -2.6065 15 1 -1.3519 -7.6562 -2.0818 16 1 -0.1261 -5.9100 -3.2344 17 8 0.4017 -3.9750 1.4934 18 6 0.5144 -2.6548 1.6772 19 8 -0.3360 -1.9876 2.2322 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 1.8934 -0.5138 -0.8899 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6053 -0.2616 2.1370 28 1 3.1263 -0.6443 1.2952 29 1 3.4045 -3.3165 1.1044 30 1 2.6045 -3.0303 -0.4725 31 1 -0.5272 -7.5758 0.5298 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219012633.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:50 Heat of formation + Delta-G solvation = -109.437072 kcal Electronic energy + Delta-G solvation = -14814.468499 eV Core-core repulsion = 12287.858269 eV Total energy + Delta-G solvation = -2526.610230 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.06951 -38.17499 -37.52549 -34.86305 -34.70122 -30.94159 -28.08405 -27.80734 -26.41586 -23.58005 -22.15595 -20.88807 -19.20631 -18.00255 -17.51614 -17.11591 -16.49114 -15.89507 -15.43382 -15.09218 -14.74269 -14.66679 -13.91404 -13.56605 -13.45202 -13.04068 -12.83957 -12.80558 -12.72372 -12.38996 -12.15608 -11.83852 -11.77723 -11.59197 -11.35509 -10.96062 -10.75947 -9.64278 -8.32337 -6.58186 1.40204 1.42460 1.53320 1.86454 1.99942 2.33607 2.84457 3.42347 3.81774 3.86114 3.96540 4.16717 4.32901 4.40514 4.58267 4.68287 4.79597 4.83957 4.98408 5.02219 5.12188 5.22438 5.24649 5.43255 5.45922 5.56885 5.75554 5.84287 6.53063 6.88796 7.21446 7.28725 8.75438 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039796 B = 0.009003 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.427987 B = 3109.203930 C = 3318.573090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.145 3.855 5 N -0.626 5.626 6 C 0.088 3.912 7 C 0.182 3.818 8 H 0.060 0.940 9 C -0.562 4.562 10 H 0.083 0.917 11 C 0.025 3.975 12 N -0.899 5.899 13 Si 0.971 3.029 14 H -0.259 1.259 15 H -0.287 1.287 16 H -0.263 1.263 17 O -0.356 6.356 18 C 0.625 3.375 19 O -0.593 6.593 20 H 0.014 0.986 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.362 10.949 -3.570 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 C -0.191 4.191 4 C 0.025 3.975 5 N -0.373 5.373 6 C -0.035 4.035 7 C 0.130 3.870 8 H 0.078 0.922 9 C -0.598 4.598 10 H 0.101 0.899 11 C -0.180 4.180 12 N -0.535 5.535 13 Si 0.795 3.205 14 H -0.184 1.184 15 H -0.213 1.213 16 H -0.187 1.187 17 O -0.265 6.265 18 C 0.381 3.619 19 O -0.486 6.486 20 H 0.033 0.967 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.698 10.970 -3.138 13.764 hybrid contribution -0.727 -0.858 -0.447 1.211 sum 6.971 10.111 -3.586 12.794 Atomic orbital electron populations 1.21742 0.96649 0.99814 1.01326 1.21559 0.95141 0.98171 0.98282 1.21702 1.01931 0.92972 1.02510 1.21628 1.01528 0.75763 0.98557 1.48282 1.19383 1.09743 1.59913 1.22954 0.95260 0.84785 1.00465 1.21625 0.80266 0.92294 0.92851 0.92244 1.21643 1.35728 1.10487 0.91980 0.89862 1.26101 0.94364 0.96849 1.00650 1.70138 1.33925 1.20405 1.29048 0.85368 0.77790 0.78740 0.78651 1.18389 1.21325 1.18719 1.87589 1.47214 1.19440 1.72256 1.19249 0.82697 0.82133 0.77775 1.90810 1.45613 1.61715 1.50419 0.96652 0.93351 0.91835 0.90988 0.90511 0.91718 0.92302 0.90984 0.86573 0.87687 0.88806 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 8.36 71.98 0.60 -3.86 16 2 C -0.11 -2.87 3.13 -10.79 -0.03 -2.91 16 3 C -0.13 -2.34 9.19 71.98 0.66 -1.68 16 4 C 0.15 4.04 5.46 86.38 0.47 4.51 16 5 N -0.63 -23.79 2.81 -950.78 -2.67 -26.46 16 6 C 0.09 3.16 7.32 86.63 0.63 3.80 16 7 C 0.18 8.93 3.61 30.22 0.11 9.04 16 8 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 9 C -0.56 -29.32 8.82 25.60 0.23 -29.09 16 10 H 0.08 4.03 7.38 -2.91 -0.02 4.01 16 11 C 0.02 1.33 5.44 84.65 0.46 1.79 16 12 N -0.90 -52.70 13.11 21.45 0.28 -52.41 16 13 Si 0.97 41.80 29.54 68.60 2.03 43.82 16 14 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 15 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 17 O -0.36 -20.12 10.57 -47.28 -0.50 -20.62 16 18 C 0.63 31.29 7.52 129.86 0.98 32.26 16 19 O -0.59 -32.22 16.40 19.67 0.32 -31.90 16 20 H 0.01 0.61 6.15 -2.38 -0.01 0.59 16 21 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 2.13 7.94 -2.39 -0.02 2.12 16 28 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 30 H 0.09 3.12 7.45 -2.39 -0.02 3.10 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -69.73 263.12 4.67 -65.05 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.10 Total: 8.66 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 4.11 Total: 13.86 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.39 Total: -78.87 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.18 Total: -52.52 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -69.73 4.67 -65.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219012633.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.386 kcal (2) G-P(sol) polarization free energy of solvation -69.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds