Wall clock time and date at job start Mon Mar 30 2020 03:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47072 * 2 1 4 4 C 1.52996 * 109.47483 * 239.99781 * 2 1 3 5 5 N 1.46509 * 109.46683 * 119.99521 * 2 1 3 6 6 C 1.47095 * 125.55725 * 180.17390 * 5 2 1 7 7 C 1.54090 * 103.77278 * 180.23312 * 6 5 2 8 8 H 1.09001 * 110.51909 * 241.15501 * 7 6 5 9 9 C 1.50702 * 110.51907 * 118.42071 * 7 6 5 10 10 H 1.07997 * 120.00189 * 3.95926 * 9 7 6 11 11 C 1.37875 * 119.99999 * 183.95813 * 9 7 6 12 12 N 1.31522 * 120.00046 * 359.97438 * 11 9 7 13 13 Si 1.86797 * 120.00234 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47426 * 59.99721 * 13 11 9 15 15 H 1.48497 * 109.47268 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47203 * 300.00034 * 13 11 9 17 17 O 1.45693 * 104.00959 * 359.78960 * 7 6 5 18 18 C 1.33771 * 109.48003 * 359.97438 * 17 7 6 19 19 O 1.21513 * 123.07308 * 179.97438 * 18 17 7 20 20 H 1.08999 * 109.47517 * 300.00463 * 1 2 3 21 21 H 1.09002 * 109.46642 * 60.00100 * 1 2 3 22 22 H 1.08997 * 109.47237 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47039 * 179.97438 * 3 2 1 24 24 H 1.08992 * 109.47208 * 299.99677 * 3 2 1 25 25 H 1.09004 * 109.46967 * 59.99721 * 3 2 1 26 26 H 1.08999 * 109.46863 * 299.99513 * 4 2 1 27 27 H 1.08992 * 109.46983 * 60.00209 * 4 2 1 28 28 H 1.09000 * 109.46791 * 180.02562 * 4 2 1 29 29 H 1.09004 * 110.74407 * 61.57573 * 6 5 2 30 30 H 1.09003 * 110.51336 * 298.77912 * 6 5 2 31 31 H 0.96993 * 119.99847 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6906 1.1963 6 6 3.4316 -0.8912 1.5512 7 6 3.3693 -1.6677 2.8807 8 1 3.8424 -1.0964 3.6794 9 6 4.0241 -3.0172 2.7355 10 1 4.5073 -3.2859 1.8078 11 6 4.0062 -3.9089 3.7869 12 7 3.4182 -3.5815 4.9169 13 14 4.8184 -5.5814 3.6072 14 1 6.2631 -5.4013 3.3141 15 1 4.6618 -6.3461 4.8704 16 1 4.1768 -6.3263 2.4942 17 8 1.9426 -1.8170 3.1355 18 6 1.2502 -1.2395 2.1473 19 8 0.0357 -1.2198 2.1121 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6768 -1.7489 -1.2490 27 1 1.6768 -0.2075 -2.1391 28 1 3.1301 -0.7216 -1.2488 29 1 3.9344 0.0659 1.6900 30 1 3.9374 -1.4810 0.7867 31 1 3.4053 -4.2090 5.6564 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219013168.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:54 Heat of formation + Delta-G solvation = -78.125535 kcal Electronic energy + Delta-G solvation = -15045.881371 eV Core-core repulsion = 12520.628912 eV Total energy + Delta-G solvation = -2525.252460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.42075 -36.83978 -35.90032 -32.79789 -32.01648 -28.77205 -27.16615 -27.09272 -24.78703 -21.88142 -21.46716 -18.83057 -17.04825 -16.17191 -15.58141 -15.06753 -14.65515 -14.14921 -13.78865 -13.56786 -13.08073 -12.96432 -12.45862 -12.00814 -11.83632 -11.73756 -11.52203 -11.35811 -10.99877 -10.87579 -10.80821 -10.72556 -10.47057 -9.86807 -9.11854 -8.91509 -8.72568 -8.06032 -6.26621 -4.46070 3.20646 3.26870 3.28035 3.42236 3.88044 4.24202 4.80681 4.94173 5.15538 5.27242 5.35240 5.60920 5.69674 5.73331 5.88176 5.90567 5.96882 6.01312 6.15955 6.20717 6.21455 6.54656 6.59566 6.90644 7.08727 7.37856 7.61721 7.82277 8.52477 8.82163 9.15836 9.29797 10.79852 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046236 B = 0.009361 C = 0.008785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.438502 B = 2990.508725 C = 3186.411213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.192 3.808 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.631 5.631 6 C 0.077 3.923 7 C 0.198 3.802 8 H 0.072 0.928 9 C -0.553 4.553 10 H 0.072 0.928 11 C 0.081 3.919 12 N -0.853 5.853 13 Si 0.903 3.097 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.273 1.273 17 O -0.311 6.311 18 C 0.634 3.366 19 O -0.564 6.564 20 H 0.068 0.932 21 H 0.050 0.950 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.009 6.833 -9.303 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.108 3.892 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.380 5.380 6 C -0.047 4.047 7 C 0.145 3.855 8 H 0.090 0.910 9 C -0.589 4.589 10 H 0.090 0.910 11 C -0.128 4.128 12 N -0.487 5.487 13 Si 0.729 3.271 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.198 1.198 17 O -0.219 6.219 18 C 0.391 3.609 19 O -0.454 6.454 20 H 0.087 0.913 21 H 0.069 0.931 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.282 6.666 -8.893 11.118 hybrid contribution 0.633 -0.877 -0.109 1.087 sum 0.914 5.789 -9.002 10.742 Atomic orbital electron populations 1.22048 0.92419 1.03699 1.01296 1.20142 0.95061 0.90811 0.83147 1.22182 1.01451 0.95610 1.02137 1.22176 1.01530 1.01153 0.96561 1.48237 1.07201 1.59366 1.23237 1.22916 0.82309 0.99733 0.99709 1.21484 0.76281 0.96808 0.90878 0.91034 1.21143 1.37147 1.00122 1.00528 0.91016 1.25141 0.93833 0.99072 0.94757 1.70005 1.39340 1.36153 1.03210 0.86493 0.79773 0.82965 0.77865 1.19734 1.20853 1.19825 1.87670 1.23425 1.69384 1.41418 1.19046 0.86105 0.76370 0.79355 1.90862 1.10258 1.65144 1.79136 0.91261 0.93074 0.91149 0.92334 0.91668 0.92257 0.92064 0.91766 0.92282 0.91856 0.90424 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 7.02 37.16 0.26 -1.98 16 2 C 0.19 3.05 1.22 -131.82 -0.16 2.88 16 3 C -0.16 -2.00 8.55 37.16 0.32 -1.68 16 4 C -0.16 -2.12 8.55 37.16 0.32 -1.81 16 5 N -0.63 -12.65 2.77 -163.90 -0.45 -13.11 16 6 C 0.08 1.49 6.52 -3.15 -0.02 1.47 16 7 C 0.20 4.87 3.69 -27.31 -0.10 4.77 16 8 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 9 C -0.55 -14.53 8.83 -34.44 -0.30 -14.84 16 10 H 0.07 1.79 7.38 -52.49 -0.39 1.40 16 11 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 12 N -0.85 -24.51 12.95 55.43 0.72 -23.79 16 13 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 O -0.31 -8.59 10.34 -37.83 -0.39 -8.98 16 18 C 0.63 15.75 8.71 53.71 0.47 16.22 16 19 O -0.56 -14.78 13.95 -19.12 -0.27 -15.05 16 20 H 0.07 1.26 7.09 -51.93 -0.37 0.89 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.07 1.31 7.09 -51.93 -0.37 0.94 16 23 H 0.06 0.71 7.72 -51.93 -0.40 0.31 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.77 7.71 -51.93 -0.40 0.37 16 29 H 0.06 1.05 7.87 -51.93 -0.41 0.64 16 30 H 0.08 1.44 7.17 -51.93 -0.37 1.07 16 31 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 258.57 15.07 3.90 3.90 Total: -1.00 -30.97 258.57 -5.22 -36.19 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -4.38 Total: -1.75 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 0.68 Total: 7.13 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.26 Total: -36.90 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.66 Total: -24.03 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.97 -5.22 -36.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219013168.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.937 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds