Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99676 * 2 1 4 4 H 1.48502 * 109.46816 * 269.63987 * 3 2 1 5 5 H 1.48494 * 109.47534 * 29.63692 * 3 2 1 6 6 H 1.48501 * 109.47498 * 149.64150 * 3 2 1 7 7 C 1.37881 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99544 * 353.55282 * 7 2 1 9 9 C 1.50696 * 119.99895 * 173.54482 * 7 2 1 10 10 H 1.08994 * 109.47171 * 54.64525 * 9 7 2 11 11 C 1.50705 * 109.46851 * 174.64625 * 9 7 2 12 12 O 1.20825 * 119.99862 * 116.02560 * 11 9 7 13 13 O 1.34227 * 119.99926 * 296.02464 * 11 9 7 14 14 N 1.46902 * 109.47339 * 294.64647 * 9 7 2 15 15 C 1.46842 * 111.00015 * 175.00440 * 14 9 7 16 16 C 1.53035 * 109.52270 * 185.83946 * 15 14 9 17 17 C 1.53122 * 109.27756 * 300.81695 * 16 15 14 18 18 C 1.53114 * 109.21283 * 57.62139 * 17 16 15 19 19 C 1.46849 * 110.99631 * 299.21001 * 14 9 7 20 20 H 0.97000 * 120.00491 * 0.02562 * 1 2 3 21 21 H 0.96698 * 117.00413 * 185.05490 * 13 11 9 22 22 H 1.08999 * 109.46681 * 65.81680 * 15 14 9 23 23 H 1.09004 * 109.45417 * 305.84838 * 15 14 9 24 24 H 1.09004 * 109.50186 * 180.88058 * 16 15 14 25 25 H 1.08996 * 109.50847 * 60.76033 * 16 15 14 26 26 H 1.09002 * 109.52028 * 177.56146 * 17 16 15 27 27 H 1.09002 * 109.52526 * 297.68460 * 17 16 15 28 28 H 1.09005 * 109.50421 * 62.31926 * 18 17 16 29 29 H 1.09004 * 109.50365 * 182.43326 * 18 17 16 30 30 H 1.09003 * 109.46641 * 294.17712 * 19 14 9 31 31 H 1.08998 * 109.46189 * 54.15937 * 19 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5041 2.0420 -1.4001 5 1 1.4427 2.6549 0.6923 6 1 3.5428 1.4426 0.7076 7 6 2.0046 -1.1940 0.0005 8 1 1.4698 -2.1263 0.1060 9 6 3.5044 -1.1981 -0.1462 10 1 3.9459 -0.5579 0.6175 11 6 4.0212 -2.6043 0.0168 12 8 4.5665 -3.1585 -0.9081 13 8 3.8758 -3.2411 1.1894 14 7 3.8676 -0.6941 -1.4774 15 6 5.3245 -0.5720 -1.6144 16 6 5.6587 0.0897 -2.9532 17 6 5.0896 -0.7598 -4.0930 18 6 3.5783 -0.9135 -3.9008 19 6 3.3044 -1.5447 -2.5337 20 1 -0.4851 0.8400 -0.0004 21 1 4.2887 -4.1117 1.2704 22 1 5.7773 -1.5628 -1.5759 23 1 5.7159 0.0379 -0.8001 24 1 6.7406 0.1660 -3.0615 25 1 5.2179 1.0860 -2.9869 26 1 5.2876 -0.2700 -5.0463 27 1 5.5597 -1.7432 -4.0842 28 1 3.1037 0.0666 -3.9497 29 1 3.1748 -1.5534 -4.6856 30 1 3.7666 -2.5309 -2.4910 31 1 2.2286 -1.6411 -2.3874 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219016736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = -90.743756 kcal Electronic energy + Delta-G solvation = -15350.473310 eV Core-core repulsion = 12824.673683 eV Total energy + Delta-G solvation = -2525.799627 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.94970 -37.70578 -35.26800 -33.76251 -31.87594 -30.14965 -28.14613 -24.02011 -22.90568 -22.32625 -20.00322 -19.16914 -17.37824 -16.91677 -15.90100 -15.13084 -14.74844 -14.29121 -13.95762 -13.46090 -13.04706 -12.75578 -12.66560 -12.35755 -11.81238 -11.42452 -11.11011 -10.97135 -10.71129 -10.33703 -10.19374 -9.96103 -9.85895 -9.75399 -9.65000 -9.31092 -8.64317 -7.31522 -6.17178 -4.27304 3.04399 3.42988 3.47225 3.55623 4.01251 4.47532 4.70051 5.27048 5.38074 5.41515 5.49021 5.88456 6.06626 6.11394 6.13544 6.22158 6.33140 6.36202 6.44581 6.54397 6.61696 6.71446 6.92337 7.08632 7.27483 7.35742 7.88949 8.02741 8.33807 8.73730 8.80479 9.41920 10.91755 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.017014 C = 0.012484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.231583 B = 1645.269395 C = 2242.408494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.096 3.904 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.078 0.922 9 C 0.188 3.812 10 H 0.082 0.918 11 C 0.469 3.531 12 O -0.543 6.543 13 O -0.512 6.512 14 N -0.508 5.508 15 C 0.033 3.967 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.044 3.956 20 H 0.268 0.732 21 H 0.386 0.614 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.115 -0.823 -3.252 9.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.110 4.110 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.096 0.904 9 C 0.080 3.920 10 H 0.099 0.901 11 C 0.313 3.687 12 O -0.434 6.434 13 O -0.320 6.320 14 N -0.233 5.233 15 C -0.096 4.096 16 C -0.150 4.150 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.083 4.083 20 H 0.078 0.922 21 H 0.242 0.758 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.687 -0.009 -3.591 9.400 hybrid contribution 0.989 -0.537 0.107 1.131 sum 9.676 -0.547 -3.484 10.299 Atomic orbital electron populations 1.69916 1.06602 1.27714 1.47858 1.24847 0.94550 0.99518 0.92069 0.86273 0.79106 0.81861 0.78967 1.19310 1.23078 1.19650 1.20354 0.86333 0.95569 1.53176 0.90359 1.19891 0.99060 0.83448 0.89607 0.90107 1.26016 0.73191 0.90873 0.78580 1.90501 1.43123 1.69003 1.40804 1.84768 1.72568 1.35262 1.39442 1.62815 1.08478 1.49048 1.02964 1.22270 0.90614 0.99664 0.97004 1.21521 0.99079 0.99610 0.94777 1.21535 0.96815 0.99577 0.97456 1.21589 0.95194 1.01243 0.97311 1.22244 1.01811 0.95273 0.89007 0.92226 0.75825 0.93524 0.92228 0.92610 0.91747 0.92931 0.92574 0.91886 0.92509 0.92277 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 2 C 0.10 2.67 5.46 -17.82 -0.10 2.57 16 3 Si 0.91 22.06 26.56 -169.99 -4.52 17.55 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.27 -6.31 6.37 56.52 0.36 -5.95 16 7 C -0.52 -13.97 7.65 -34.44 -0.26 -14.24 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C 0.19 4.40 1.63 -70.01 -0.11 4.29 16 10 H 0.08 1.89 6.55 -51.93 -0.34 1.55 16 11 C 0.47 10.18 6.94 36.01 0.25 10.43 16 12 O -0.54 -12.00 12.41 -18.75 -0.23 -12.23 16 13 O -0.51 -9.74 13.40 -39.25 -0.53 -10.27 16 14 N -0.51 -11.18 3.08 -229.48 -0.71 -11.88 16 15 C 0.03 0.62 5.08 -3.84 -0.02 0.60 16 16 C -0.11 -1.83 6.10 -26.65 -0.16 -1.99 16 17 C -0.12 -1.84 6.00 -26.61 -0.16 -2.00 16 18 C -0.12 -2.08 6.10 -26.65 -0.16 -2.24 16 19 C 0.04 0.94 4.80 -3.83 -0.02 0.92 16 20 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 21 H 0.39 5.18 9.10 45.56 0.41 5.59 16 22 H 0.05 0.92 6.06 -51.93 -0.31 0.61 16 23 H 0.06 1.08 8.08 -51.93 -0.42 0.67 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.32 5.32 -51.93 -0.28 1.04 16 31 H 0.09 2.12 6.92 -51.93 -0.36 1.76 16 LS Contribution 246.93 15.07 3.72 3.72 Total: -1.00 -30.11 246.93 -5.66 -35.77 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -3.43 Total: 4.18 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.75 Total: -1.66 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.07 Total: -37.07 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.76 Total: -22.50 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.52 Total: 17.55 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.11 -5.66 -35.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219016736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.972 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds