Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99676 * 2 1 4 4 H 1.48502 * 109.46816 * 269.63987 * 3 2 1 5 5 H 1.48494 * 109.47534 * 29.63692 * 3 2 1 6 6 H 1.48501 * 109.47498 * 149.64150 * 3 2 1 7 7 C 1.37881 * 120.00416 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99544 * 353.55282 * 7 2 1 9 9 C 1.50696 * 119.99895 * 173.54482 * 7 2 1 10 10 H 1.08994 * 109.47171 * 54.64525 * 9 7 2 11 11 C 1.50705 * 109.46851 * 174.64625 * 9 7 2 12 12 O 1.20825 * 119.99862 * 116.02560 * 11 9 7 13 13 O 1.34227 * 119.99926 * 296.02464 * 11 9 7 14 14 N 1.46902 * 109.47339 * 294.64647 * 9 7 2 15 15 C 1.46842 * 111.00015 * 175.00440 * 14 9 7 16 16 C 1.53035 * 109.52270 * 185.83946 * 15 14 9 17 17 C 1.53122 * 109.27756 * 300.81695 * 16 15 14 18 18 C 1.53114 * 109.21283 * 57.62139 * 17 16 15 19 19 C 1.46849 * 110.99631 * 299.21001 * 14 9 7 20 20 H 0.97000 * 120.00491 * 0.02562 * 1 2 3 21 21 H 0.96698 * 117.00413 * 185.05490 * 13 11 9 22 22 H 1.08999 * 109.46681 * 65.81680 * 15 14 9 23 23 H 1.09004 * 109.45417 * 305.84838 * 15 14 9 24 24 H 1.09004 * 109.50186 * 180.88058 * 16 15 14 25 25 H 1.08996 * 109.50847 * 60.76033 * 16 15 14 26 26 H 1.09002 * 109.52028 * 177.56146 * 17 16 15 27 27 H 1.09002 * 109.52526 * 297.68460 * 17 16 15 28 28 H 1.09005 * 109.50421 * 62.31926 * 18 17 16 29 29 H 1.09004 * 109.50365 * 182.43326 * 18 17 16 30 30 H 1.09003 * 109.46641 * 294.17712 * 19 14 9 31 31 H 1.08998 * 109.46189 * 54.15937 * 19 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5041 2.0420 -1.4001 5 1 1.4427 2.6549 0.6923 6 1 3.5428 1.4426 0.7076 7 6 2.0046 -1.1940 0.0005 8 1 1.4698 -2.1263 0.1060 9 6 3.5044 -1.1981 -0.1462 10 1 3.9459 -0.5579 0.6175 11 6 4.0212 -2.6043 0.0168 12 8 4.5665 -3.1585 -0.9081 13 8 3.8758 -3.2411 1.1894 14 7 3.8676 -0.6941 -1.4774 15 6 5.3245 -0.5720 -1.6144 16 6 5.6587 0.0897 -2.9532 17 6 5.0896 -0.7598 -4.0930 18 6 3.5783 -0.9135 -3.9008 19 6 3.3044 -1.5447 -2.5337 20 1 -0.4851 0.8400 -0.0004 21 1 4.2887 -4.1117 1.2704 22 1 5.7773 -1.5628 -1.5759 23 1 5.7159 0.0379 -0.8001 24 1 6.7406 0.1660 -3.0615 25 1 5.2179 1.0860 -2.9869 26 1 5.2876 -0.2700 -5.0463 27 1 5.5597 -1.7432 -4.0842 28 1 3.1037 0.0666 -3.9497 29 1 3.1748 -1.5534 -4.6856 30 1 3.7666 -2.5309 -2.4910 31 1 2.2286 -1.6411 -2.3874 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219016736.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = -112.307796 kcal Electronic energy + Delta-G solvation = -15351.408397 eV Core-core repulsion = 12824.673683 eV Total energy + Delta-G solvation = -2526.734714 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.64166 -39.26526 -36.89098 -35.56675 -33.77814 -31.63783 -29.93897 -25.95430 -24.45260 -23.83332 -21.72577 -20.64568 -19.15584 -18.88525 -17.62032 -16.76017 -16.54087 -15.98852 -15.44353 -15.10490 -14.70497 -14.53937 -14.18709 -13.95016 -13.51259 -12.93989 -12.87854 -12.63889 -12.54785 -11.89263 -11.84973 -11.70410 -11.56399 -11.38440 -11.20014 -11.03634 -10.76131 -9.02123 -8.30990 -6.45043 1.30461 1.47548 1.55292 1.61436 2.41383 2.46688 2.89323 3.37972 4.00980 4.06902 4.13714 4.40025 4.50225 4.60867 4.66520 4.72911 4.85628 4.95659 5.07291 5.10934 5.15288 5.25995 5.32266 5.40296 5.53728 5.76535 6.00392 6.21121 6.46748 6.63169 7.16673 7.27224 8.81701 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.017014 C = 0.012484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.231583 B = 1645.269395 C = 2242.408494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.049 3.951 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.302 1.302 6 H -0.251 1.251 7 C -0.515 4.515 8 H 0.035 0.965 9 C 0.186 3.814 10 H 0.087 0.913 11 C 0.472 3.528 12 O -0.548 6.548 13 O -0.513 6.513 14 N -0.518 5.518 15 C 0.030 3.970 16 C -0.109 4.109 17 C -0.111 4.111 18 C -0.113 4.113 19 C 0.050 3.950 20 H 0.271 0.729 21 H 0.413 0.587 22 H 0.040 0.960 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 0.033 -3.985 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.153 4.153 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.230 1.230 6 H -0.175 1.175 7 C -0.553 4.553 8 H 0.054 0.946 9 C 0.078 3.922 10 H 0.104 0.896 11 C 0.315 3.685 12 O -0.440 6.440 13 O -0.324 6.324 14 N -0.243 5.243 15 C -0.097 4.097 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.078 4.078 20 H 0.080 0.920 21 H 0.273 0.727 22 H 0.059 0.941 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.129 0.813 -4.312 11.963 hybrid contribution 0.216 -0.953 0.372 1.046 sum 11.345 -0.139 -3.939 12.011 Atomic orbital electron populations 1.70027 1.08332 1.28665 1.49947 1.25610 0.95098 1.02847 0.91717 0.85365 0.78615 0.77646 0.79137 1.19087 1.23026 1.17524 1.20382 0.88503 0.93869 1.52593 0.94630 1.19702 0.96598 0.85106 0.90834 0.89596 1.25561 0.73175 0.90591 0.79138 1.90496 1.43395 1.69068 1.41049 1.84678 1.72576 1.37057 1.38041 1.62656 1.10823 1.48820 1.01982 1.22399 0.88141 0.99904 0.99302 1.21553 1.01147 0.98986 0.93028 1.21518 0.94505 1.00029 0.98812 1.21579 0.97429 1.00663 0.95391 1.22122 0.99132 0.95415 0.91091 0.92043 0.72743 0.94147 0.91237 0.89398 0.92021 0.89976 0.92427 0.92755 0.90907 0.93209 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.27 13.96 21.45 0.30 -55.97 16 2 C 0.05 2.75 5.46 84.66 0.46 3.21 16 3 Si 0.97 45.05 26.56 68.60 1.82 46.87 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.25 -10.78 6.37 99.48 0.63 -10.15 16 7 C -0.52 -28.60 7.65 25.60 0.20 -28.40 16 8 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 9 C 0.19 8.64 1.63 43.42 0.07 8.71 16 10 H 0.09 3.88 6.55 -2.39 -0.02 3.86 16 11 C 0.47 20.13 6.94 71.24 0.49 20.62 16 12 O -0.55 -23.63 12.41 21.97 0.27 -23.36 16 13 O -0.51 -18.92 13.40 -51.39 -0.69 -19.61 16 14 N -0.52 -22.15 3.08 -879.93 -2.71 -24.86 16 15 C 0.03 1.06 5.08 86.33 0.44 1.50 16 16 C -0.11 -3.15 6.10 30.65 0.19 -2.96 16 17 C -0.11 -3.12 6.00 30.67 0.18 -2.94 16 18 C -0.11 -3.85 6.10 30.65 0.19 -3.67 16 19 C 0.05 2.13 4.80 86.33 0.41 2.54 16 20 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 21 H 0.41 10.29 9.10 -74.06 -0.67 9.62 16 22 H 0.04 1.49 6.06 -2.39 -0.01 1.47 16 23 H 0.07 2.30 8.08 -2.38 -0.02 2.28 16 24 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 2.21 5.32 -2.39 -0.01 2.20 16 31 H 0.05 2.37 6.92 -2.39 -0.02 2.36 16 Total: -1.00 -65.41 246.93 2.01 -63.40 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.38 Total: 14.92 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 2.63 Total: -1.38 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -2.41 Total: -80.83 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.42 Total: -42.97 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.82 Total: 46.87 kcal Total: -65.41 2.01 -63.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219016736.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.912 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds