Wall clock time and date at job start Mon Mar 30 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99755 * 2 1 4 4 H 1.48503 * 109.47292 * 269.99705 * 3 2 1 5 5 H 1.48496 * 109.47395 * 30.00152 * 3 2 1 6 6 H 1.48504 * 109.46709 * 150.00162 * 3 2 1 7 7 C 1.40045 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99678 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00280 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99620 * 179.97438 * 9 7 2 12 12 C 1.46494 * 119.99635 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.02104 * 325.69629 * 12 11 9 14 14 C 1.53868 * 110.03456 * 87.09373 * 12 11 9 15 15 C 1.54268 * 106.60104 * 119.28248 * 14 12 11 16 16 C 1.54888 * 104.19417 * 23.61123 * 15 14 12 17 17 C 1.54269 * 110.03124 * 204.31075 * 12 11 9 18 18 H 1.09006 * 110.48243 * 335.78311 * 17 12 11 19 19 C 1.53002 * 110.48863 * 98.42492 * 17 12 11 20 20 O 1.42900 * 109.47034 * 184.99955 * 19 17 12 21 21 H 0.97000 * 119.99643 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00015 * 359.72539 * 11 9 7 23 23 H 1.09000 * 110.03716 * 238.56856 * 14 12 11 24 24 H 1.08998 * 110.03229 * 359.95033 * 14 12 11 25 25 H 1.09001 * 110.48717 * 142.29264 * 15 14 12 26 26 H 1.09006 * 110.48351 * 264.93311 * 15 14 12 27 27 H 1.08995 * 110.75609 * 80.37419 * 16 15 14 28 28 H 1.09008 * 110.75724 * 203.56246 * 16 15 14 29 29 H 1.08996 * 109.47480 * 305.00410 * 19 17 12 30 30 H 1.08998 * 109.46728 * 65.00368 * 19 17 12 31 31 H 0.96706 * 113.99411 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2750 -2.4804 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2164 -4.9163 0.0011 13 1 0.2974 -4.8163 0.5786 14 6 0.8888 -5.3365 -1.4424 15 6 1.5815 -6.6954 -1.6739 16 6 1.7490 -7.2836 -0.2509 17 6 2.0963 -6.0343 0.5977 18 1 3.1523 -5.7847 0.4944 19 6 1.7413 -6.2683 2.0675 20 8 2.6442 -7.2229 2.6294 21 1 -0.4849 0.8401 0.0004 22 1 2.9189 -3.6477 -0.0035 23 1 -0.1892 -5.4412 -1.5653 24 1 1.2741 -4.5961 -2.1433 25 1 0.9533 -7.3448 -2.2837 26 1 2.5542 -6.5524 -2.1446 27 1 0.8186 -7.7362 0.0920 28 1 2.5620 -8.0093 -0.2260 29 1 1.8194 -5.3287 2.6142 30 1 0.7216 -6.6467 2.1391 31 1 2.4777 -7.4205 3.5613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229001679.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:35 Heat of formation + Delta-G solvation = -108.995290 kcal Electronic energy + Delta-G solvation = -14424.924634 eV Core-core repulsion = 11898.333561 eV Total energy + Delta-G solvation = -2526.591073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.84716 -36.75336 -35.74173 -32.64748 -31.80608 -29.77284 -27.52403 -25.70895 -23.81093 -20.63657 -19.90654 -19.12158 -17.30830 -16.81156 -15.60019 -15.24584 -14.91704 -14.50290 -13.92105 -13.44701 -13.16613 -12.51884 -12.31173 -12.00305 -11.59588 -11.15116 -10.96134 -10.76879 -10.68785 -10.62685 -10.42210 -10.36674 -10.17576 -10.04214 -9.75391 -8.84208 -7.58977 -7.46456 -6.17052 -4.62486 3.14670 3.21518 3.24942 4.11274 4.31428 4.58921 4.78371 4.97100 5.15558 5.20544 5.51378 5.64937 5.74784 5.79691 5.91779 5.97932 5.99909 6.10079 6.21879 6.28919 6.37669 6.62146 6.74245 6.85782 7.44836 7.71478 7.96136 8.15921 8.36297 9.04152 9.57148 10.61972 10.81125 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042771 B = 0.007536 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.486714 B = 3714.478560 C = 3995.338193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.761 5.761 12 C 0.160 3.840 13 H 0.078 0.922 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.111 4.111 17 C -0.097 4.097 18 H 0.082 0.918 19 C 0.084 3.916 20 O -0.576 6.576 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 -10.566 1.505 11.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.053 3.947 13 H 0.096 0.904 14 C -0.172 4.172 15 C -0.162 4.162 16 C -0.149 4.149 17 C -0.116 4.116 18 H 0.101 0.899 19 C 0.006 3.994 20 O -0.381 6.381 21 H 0.078 0.922 22 H 0.211 0.789 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.452 -10.416 0.904 11.010 hybrid contribution 0.649 0.865 0.543 1.210 sum 4.101 -9.551 1.448 10.494 Atomic orbital electron populations 1.70026 1.07029 1.27176 1.35522 1.25703 0.94606 1.00253 0.92638 0.86394 0.80166 0.81490 0.78817 1.19764 1.20482 1.18943 1.20906 0.93581 0.89503 1.54355 0.91502 1.18211 0.87219 0.82495 0.76183 1.90590 1.14074 1.86858 1.54860 1.46284 1.08360 1.04660 1.82254 1.21045 0.95263 0.83849 0.94551 0.90409 1.22599 1.00242 0.96164 0.98159 1.22377 1.00387 0.96867 0.96600 1.22450 1.01057 0.96534 0.94819 1.22256 1.00963 0.95753 0.92628 0.89945 1.22258 0.91685 0.91279 0.94172 1.86458 1.58168 1.63842 1.29636 0.92172 0.78889 0.92020 0.91198 0.92193 0.91966 0.91753 0.91654 0.93167 0.93689 0.77979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.17 11.83 55.55 0.66 -22.52 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.28 29.56 -169.99 -5.02 15.25 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.53 9.54 -35.63 -0.34 -15.87 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.55 15.78 7.74 -12.98 -0.10 15.68 16 10 O -0.58 -18.75 14.69 5.21 0.08 -18.68 16 11 N -0.76 -17.09 4.98 -54.13 -0.27 -17.36 16 12 C 0.16 3.09 2.80 -66.82 -0.19 2.90 16 13 H 0.08 1.69 7.28 -51.93 -0.38 1.31 16 14 C -0.13 -2.37 6.59 -25.62 -0.17 -2.54 16 15 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 16 C -0.11 -1.52 6.25 -24.70 -0.15 -1.67 16 17 C -0.10 -1.51 2.83 -88.92 -0.25 -1.77 16 18 H 0.08 1.31 7.73 -51.93 -0.40 0.91 16 19 C 0.08 1.21 6.32 37.16 0.24 1.45 16 20 O -0.58 -7.58 13.57 -35.23 -0.48 -8.06 16 21 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 22 H 0.38 7.65 8.33 -40.82 -0.34 7.31 16 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.07 1.38 7.92 -51.93 -0.41 0.97 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.84 7.97 -51.93 -0.41 0.43 16 28 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.61 8.02 -51.93 -0.42 0.19 16 31 H 0.37 3.16 9.12 45.56 0.42 3.57 16 LS Contribution 263.58 15.07 3.97 3.97 Total: -1.00 -34.25 263.58 -5.91 -40.16 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.60 Total: 8.60 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.23 Total: -1.37 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.39 Total: -39.88 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.40 Total: -26.73 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -34.25 -5.91 -40.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229001679.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.837 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds