Wall clock time and date at job start Mon Mar 30 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 119.99755 * 2 1 4 4 H 1.48503 * 109.47292 * 269.99705 * 3 2 1 5 5 H 1.48496 * 109.47395 * 30.00152 * 3 2 1 6 6 H 1.48504 * 109.46709 * 150.00162 * 3 2 1 7 7 C 1.40045 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99678 * 0.02562 * 7 2 1 10 10 O 1.21682 * 120.00280 * 359.97438 * 9 7 2 11 11 N 1.34784 * 119.99620 * 179.97438 * 9 7 2 12 12 C 1.46494 * 119.99635 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.02104 * 325.69629 * 12 11 9 14 14 C 1.53868 * 110.03456 * 87.09373 * 12 11 9 15 15 C 1.54268 * 106.60104 * 119.28248 * 14 12 11 16 16 C 1.54888 * 104.19417 * 23.61123 * 15 14 12 17 17 C 1.54269 * 110.03124 * 204.31075 * 12 11 9 18 18 H 1.09006 * 110.48243 * 335.78311 * 17 12 11 19 19 C 1.53002 * 110.48863 * 98.42492 * 17 12 11 20 20 O 1.42900 * 109.47034 * 184.99955 * 19 17 12 21 21 H 0.97000 * 119.99643 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00015 * 359.72539 * 11 9 7 23 23 H 1.09000 * 110.03716 * 238.56856 * 14 12 11 24 24 H 1.08998 * 110.03229 * 359.95033 * 14 12 11 25 25 H 1.09001 * 110.48717 * 142.29264 * 15 14 12 26 26 H 1.09006 * 110.48351 * 264.93311 * 15 14 12 27 27 H 1.08995 * 110.75609 * 80.37419 * 16 15 14 28 28 H 1.09008 * 110.75724 * 203.56246 * 16 15 14 29 29 H 1.08996 * 109.47480 * 305.00410 * 19 17 12 30 30 H 1.08998 * 109.46728 * 65.00368 * 19 17 12 31 31 H 0.96706 * 113.99411 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2750 -2.4804 0.0005 10 8 0.0582 -2.4804 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2164 -4.9163 0.0011 13 1 0.2974 -4.8163 0.5786 14 6 0.8888 -5.3365 -1.4424 15 6 1.5815 -6.6954 -1.6739 16 6 1.7490 -7.2836 -0.2509 17 6 2.0963 -6.0343 0.5977 18 1 3.1523 -5.7847 0.4944 19 6 1.7413 -6.2683 2.0675 20 8 2.6442 -7.2229 2.6294 21 1 -0.4849 0.8401 0.0004 22 1 2.9189 -3.6477 -0.0035 23 1 -0.1892 -5.4412 -1.5653 24 1 1.2741 -4.5961 -2.1433 25 1 0.9533 -7.3448 -2.2837 26 1 2.5542 -6.5524 -2.1446 27 1 0.8186 -7.7362 0.0920 28 1 2.5620 -8.0093 -0.2260 29 1 1.8194 -5.3287 2.6142 30 1 0.7216 -6.6467 2.1391 31 1 2.4777 -7.4205 3.5613 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229001679.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:35 Heat of formation + Delta-G solvation = -136.532818 kcal Electronic energy + Delta-G solvation = -14426.118750 eV Core-core repulsion = 11898.333561 eV Total energy + Delta-G solvation = -2527.785190 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.38560 -38.53000 -37.05033 -34.72285 -33.77097 -31.02750 -29.29083 -27.54473 -25.13732 -22.32267 -21.32905 -20.78580 -19.08849 -18.19263 -17.46199 -16.91899 -16.28235 -15.83621 -15.70503 -14.98703 -14.62232 -14.29071 -14.16311 -13.38161 -13.17475 -12.85317 -12.69598 -12.53243 -12.40289 -12.01541 -11.98062 -11.78468 -11.55392 -11.43748 -10.93752 -10.86816 -9.84458 -9.43321 -8.29150 -6.85738 1.39222 1.40745 1.55926 2.24199 2.47322 3.05942 3.25794 3.54964 3.77841 3.87707 3.96315 4.31282 4.42801 4.52216 4.55264 4.65961 4.73243 4.79427 4.93291 5.09535 5.20215 5.27695 5.31294 5.34591 5.46568 5.88844 6.24028 6.34668 6.86740 6.87842 7.56325 8.50460 8.68059 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042771 B = 0.007536 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.486714 B = 3714.478560 C = 3995.338193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.540 3.460 10 O -0.631 6.631 11 N -0.749 5.749 12 C 0.154 3.846 13 H 0.046 0.954 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.101 4.101 17 C -0.090 4.090 18 H 0.083 0.917 19 C 0.090 3.910 20 O -0.581 6.581 21 H 0.274 0.726 22 H 0.392 0.608 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 -11.253 1.523 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.613 4.613 8 H 0.103 0.897 9 C 0.344 3.656 10 O -0.518 6.518 11 N -0.403 5.403 12 C 0.048 3.952 13 H 0.064 0.936 14 C -0.172 4.172 15 C -0.150 4.150 16 C -0.139 4.139 17 C -0.110 4.110 18 H 0.102 0.898 19 C 0.012 3.988 20 O -0.389 6.389 21 H 0.084 0.916 22 H 0.226 0.774 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.361 -11.166 0.938 12.421 hybrid contribution 0.057 1.004 0.567 1.155 sum 5.418 -10.162 1.505 11.614 Atomic orbital electron populations 1.70192 1.09484 1.28875 1.36605 1.26965 0.95533 1.04923 0.91227 0.85032 0.78767 0.75150 0.79415 1.18632 1.19720 1.17300 1.21452 0.94680 0.90292 1.54835 0.89667 1.18559 0.86838 0.84327 0.75865 1.90543 1.16134 1.87949 1.57179 1.45974 1.08944 1.04573 1.80767 1.21220 0.94654 0.83681 0.95625 0.93569 1.22533 1.00111 0.98157 0.96393 1.22326 1.00765 0.94390 0.97499 1.22429 1.02221 0.95626 0.93608 1.22159 0.99921 0.95135 0.93743 0.89838 1.22062 0.92468 0.91016 0.93290 1.86394 1.57792 1.63050 1.31634 0.91610 0.77432 0.92962 0.93629 0.89961 0.90931 0.90865 0.89679 0.95027 0.92740 0.75458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.94 11.83 21.84 0.26 -50.68 16 2 C 0.03 1.61 5.50 85.30 0.47 2.08 16 3 Si 1.00 41.45 29.56 68.60 2.03 43.47 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.58 -33.18 9.54 24.83 0.24 -32.94 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.39 16 9 C 0.54 31.78 7.74 86.36 0.67 32.45 16 10 O -0.63 -42.72 14.69 -4.29 -0.06 -42.78 16 11 N -0.75 -34.41 4.98 -443.39 -2.21 -36.62 16 12 C 0.15 6.07 2.80 45.72 0.13 6.20 16 13 H 0.05 2.11 7.28 -2.38 -0.02 2.09 16 14 C -0.13 -4.79 6.59 31.32 0.21 -4.58 16 15 C -0.11 -2.89 6.83 31.67 0.22 -2.67 16 16 C -0.10 -2.47 6.25 31.91 0.20 -2.27 16 17 C -0.09 -2.71 2.83 -9.69 -0.03 -2.74 16 18 H 0.08 2.50 7.73 -2.38 -0.02 2.48 16 19 C 0.09 2.49 6.32 71.98 0.46 2.94 16 20 O -0.58 -13.81 13.57 -148.98 -2.02 -15.83 16 21 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 22 H 0.39 15.85 8.33 -92.71 -0.77 15.07 16 23 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.84 7.92 -2.39 -0.02 1.82 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.07 1.69 7.97 -2.39 -0.02 1.67 16 28 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.40 8.02 -2.39 -0.02 1.39 16 31 H 0.40 5.65 9.12 -74.05 -0.68 4.98 16 Total: -1.00 -76.34 263.58 0.24 -76.10 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.31 Total: 27.87 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 2.55 Total: -1.54 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -1.95 Total: -87.29 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -2.09 Total: -58.61 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -76.34 0.24 -76.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229001679.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.430 kcal (2) G-P(sol) polarization free energy of solvation -76.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds