Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86806 * 120.00057 * 2 1 4 4 H 1.48502 * 109.47125 * 270.00368 * 3 2 1 5 5 H 1.48501 * 109.46949 * 29.99828 * 3 2 1 6 6 H 1.48498 * 109.47103 * 150.00019 * 3 2 1 7 7 C 1.40047 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00395 * 179.97438 * 7 2 1 9 9 C 1.46373 * 119.99544 * 359.97438 * 7 2 1 10 10 O 1.21685 * 120.00736 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99753 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00184 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47457 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47182 * 180.02562 * 13 12 11 15 15 H 1.09000 * 110.80833 * 51.37300 * 14 13 12 16 16 C 1.54818 * 110.90847 * 175.00210 * 14 13 12 17 17 C 1.54097 * 104.18808 * 139.11151 * 16 14 13 18 18 O 1.43745 * 107.29442 * 2.03270 * 17 16 14 19 19 C 1.44382 * 106.97554 * 333.48168 * 18 17 16 20 20 H 0.97006 * 120.00180 * 359.97438 * 1 2 3 21 21 H 0.96998 * 120.00332 * 0.02562 * 11 9 7 22 22 H 1.09007 * 109.46674 * 59.99706 * 12 11 9 23 23 H 1.08996 * 109.46933 * 300.00243 * 12 11 9 24 24 H 1.09007 * 109.47163 * 60.00319 * 13 12 11 25 25 H 1.09000 * 109.47176 * 300.00588 * 13 12 11 26 26 H 1.09004 * 110.48564 * 20.43861 * 16 14 13 27 27 H 1.08989 * 110.60109 * 257.84964 * 16 14 13 28 28 H 1.08998 * 109.88273 * 242.60534 * 17 16 14 29 29 H 1.08997 * 109.87725 * 121.45198 * 17 16 14 30 30 H 1.08999 * 110.61481 * 158.56165 * 19 18 17 31 31 H 1.08997 * 110.62085 * 281.56061 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4804 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6476 -0.0005 12 6 1.2165 -4.9164 0.0000 13 6 2.2107 -6.0793 -0.0007 14 6 1.4457 -7.4043 -0.0008 15 1 0.7009 -7.4214 -0.7965 16 6 2.4171 -8.6031 -0.1276 17 6 1.8530 -9.6514 0.8510 18 8 0.6545 -9.1010 1.4227 19 6 0.7877 -7.6640 1.3784 20 1 -0.4851 0.8401 0.0004 21 1 2.9189 -3.6477 -0.0002 22 1 0.5894 -4.9743 -0.8898 23 1 0.5902 -4.9739 0.8902 24 1 2.8380 -6.0216 0.8888 25 1 2.8367 -6.0215 -0.8912 26 1 3.4250 -8.3102 0.1665 27 1 2.4156 -8.9919 -1.1458 28 1 2.5800 -9.8533 1.6375 29 1 1.6192 -10.5710 0.3146 30 1 -0.1904 -7.1861 1.4331 31 1 1.4330 -7.3133 2.1837 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229022501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = -129.729959 kcal Electronic energy + Delta-G solvation = -13911.887260 eV Core-core repulsion = 11384.397064 eV Total energy + Delta-G solvation = -2527.490195 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48217 -39.33712 -36.24907 -34.64275 -33.72021 -31.05616 -29.18960 -27.68738 -24.57148 -22.99794 -21.77821 -21.28218 -19.18417 -17.54905 -17.43949 -16.68109 -16.41811 -16.08294 -15.82237 -15.56978 -14.65281 -14.39440 -14.00989 -13.68564 -13.17806 -13.09661 -12.77167 -12.65269 -12.47649 -12.38689 -12.03977 -11.88666 -11.66131 -11.43023 -10.93206 -10.63931 -9.88098 -9.48426 -8.29237 -6.86180 1.40984 1.42708 1.58226 2.25325 2.47095 2.93030 3.19734 3.55905 3.61773 3.80490 4.00578 4.16060 4.25129 4.36286 4.41513 4.57482 4.72481 4.81891 4.86791 4.88070 5.05073 5.09777 5.20948 5.31921 5.32543 5.87671 5.91639 6.25175 6.27528 6.86527 7.56202 8.49170 8.67402 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.083857 B = 0.005194 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 333.819981 B = 5389.483150 C = 5576.916056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.247 1.247 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.533 3.467 10 O -0.636 6.636 11 N -0.756 5.756 12 C 0.131 3.869 13 C -0.099 4.099 14 C -0.116 4.116 15 H 0.080 0.920 16 C -0.143 4.143 17 C 0.039 3.961 18 O -0.406 6.406 19 C 0.046 3.954 20 H 0.274 0.726 21 H 0.397 0.603 22 H 0.028 0.972 23 H 0.030 0.970 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.114 -13.426 0.168 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.171 1.171 7 C -0.611 4.611 8 H 0.108 0.892 9 C 0.337 3.663 10 O -0.523 6.523 11 N -0.411 5.411 12 C 0.007 3.993 13 C -0.137 4.137 14 C -0.135 4.135 15 H 0.098 0.902 16 C -0.181 4.181 17 C -0.037 4.037 18 O -0.326 6.326 19 C -0.031 4.031 20 H 0.084 0.916 21 H 0.231 0.769 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.100 0.900 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.895 -13.504 0.255 15.645 hybrid contribution 0.333 0.838 -0.068 0.905 sum 8.228 -12.666 0.187 15.105 Atomic orbital electron populations 1.70199 1.09660 1.28974 1.36545 1.27021 0.95519 1.05110 0.91140 0.84984 0.78754 0.74873 0.79437 1.18573 1.19878 1.17059 1.21467 0.94838 0.90078 1.54727 0.89204 1.18685 0.86870 0.84607 0.76114 1.90549 1.16374 1.88094 1.57309 1.45811 1.09394 1.04793 1.81093 1.21019 0.95095 0.84286 0.98940 1.21621 0.97146 0.90976 1.03958 1.22629 0.98254 0.94739 0.97923 0.90164 1.22980 0.99774 0.93973 1.01341 1.23368 0.86690 0.97581 0.96092 1.88834 1.40633 1.19792 1.83318 1.23718 1.01479 0.81022 0.96847 0.91570 0.76928 0.95391 0.95121 0.89975 0.89633 0.88949 0.89060 0.91347 0.88723 0.89993 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.17 11.83 21.83 0.26 -50.91 16 2 C 0.03 1.51 5.50 85.30 0.47 1.98 16 3 Si 1.00 40.91 29.56 68.60 2.03 42.94 16 4 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.57 -32.77 9.54 24.83 0.24 -32.53 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 9 C 0.53 31.47 7.75 86.36 0.67 32.14 16 10 O -0.64 -43.66 15.02 -4.30 -0.06 -43.72 16 11 N -0.76 -33.94 5.55 -467.40 -2.59 -36.54 16 12 C 0.13 5.01 5.57 86.38 0.48 5.49 16 13 C -0.10 -2.48 4.73 30.59 0.14 -2.34 16 14 C -0.12 -2.63 3.09 -9.49 -0.03 -2.66 16 15 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 16 C -0.14 -2.36 6.60 31.59 0.21 -2.15 16 17 C 0.04 0.70 7.70 72.35 0.56 1.26 16 18 O -0.41 -10.59 11.52 -148.98 -1.72 -12.30 16 19 C 0.05 1.15 6.63 72.67 0.48 1.63 16 20 H 0.27 15.39 8.29 -92.70 -0.77 14.62 16 21 H 0.40 14.90 8.45 -92.71 -0.78 14.12 16 22 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.03 1.27 7.73 -2.39 -0.02 1.25 16 24 H 0.08 1.85 7.98 -2.38 -0.02 1.84 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.09 1.27 7.86 -2.39 -0.02 1.25 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.07 1.62 7.93 -2.39 -0.02 1.60 16 Total: -1.00 -77.32 264.99 1.46 -75.85 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.33 Total: 21.86 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 3.22 Total: 2.83 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.34 Total: -87.45 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -1.78 Total: -56.03 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -77.32 1.46 -75.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229022501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.877 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds