Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47294 * 2 1 4 4 H 1.08996 * 109.98864 * 53.84094 * 3 2 1 5 5 O 1.44043 * 109.92658 * 292.59231 * 3 2 1 6 6 C 1.44382 * 106.98128 * 214.02240 * 5 3 2 7 7 C 1.54995 * 103.48813 * 40.13875 * 6 5 3 8 8 C 1.54105 * 109.87705 * 174.92590 * 3 2 1 9 9 H 1.09002 * 110.48162 * 240.26126 * 8 3 2 10 10 C 1.50699 * 110.48815 * 2.77514 * 8 3 2 11 11 O 1.21293 * 119.99685 * 83.43672 * 10 8 3 12 12 N 1.34777 * 120.00212 * 263.43260 * 10 8 3 13 13 C 1.37093 * 119.99805 * 179.72745 * 12 10 8 14 14 H 1.08002 * 120.00280 * 0.02562 * 13 12 10 15 15 C 1.38957 * 120.00129 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00189 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99621 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47201 * 89.99694 * 17 15 13 19 19 H 1.48496 * 109.46967 * 210.00020 * 17 15 13 20 20 H 1.48501 * 109.47052 * 329.99810 * 17 15 13 21 21 H 1.09001 * 109.46812 * 59.99842 * 1 2 3 22 22 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47117 * 300.00016 * 1 2 3 24 24 H 1.09001 * 109.47117 * 239.99983 * 2 1 3 25 25 H 1.09001 * 109.46812 * 120.00158 * 2 1 3 26 26 H 1.08993 * 110.61619 * 281.63713 * 6 5 3 27 27 H 1.09002 * 110.61622 * 158.63647 * 6 5 3 28 28 H 1.08994 * 110.90624 * 204.77736 * 7 6 5 29 29 H 1.09007 * 110.90747 * 81.17746 * 7 6 5 30 30 H 0.97001 * 119.99728 * 359.97438 * 12 10 8 31 31 H 0.97000 * 119.99846 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5944 1.9953 0.8270 5 8 1.7132 2.0788 -1.2503 6 6 2.7900 2.9917 -1.5530 7 6 4.0589 2.2047 -1.1373 8 6 3.5757 1.4553 0.1282 9 1 3.8789 1.9909 1.0278 10 6 4.1152 0.0483 0.1464 11 8 4.3072 -0.5411 -0.8962 12 7 4.3843 -0.5551 1.3211 13 6 4.8699 -1.8371 1.3377 14 1 5.0370 -2.3634 0.4095 15 6 5.1479 -2.4591 2.5488 16 7 5.6128 -3.6881 2.5647 17 14 4.8594 -1.5487 4.1542 18 1 3.4743 -1.8029 4.6254 19 1 5.8255 -2.0275 5.1752 20 1 5.0491 -0.0918 3.9380 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.6953 3.9051 -0.9658 27 1 2.8118 3.2197 -2.6187 28 1 4.8771 2.8840 -0.8984 29 1 4.3536 1.5020 -1.9167 30 1 4.2311 -0.0836 2.1548 31 1 5.8065 -4.1224 3.4102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233937823.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -90.818315 kcal Electronic energy + Delta-G solvation = -14842.186197 eV Core-core repulsion = 12316.383338 eV Total energy + Delta-G solvation = -2525.802860 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.95266 -37.57876 -34.04319 -33.23508 -31.90245 -31.49392 -28.18533 -25.12448 -23.42856 -21.58858 -21.13757 -19.15218 -18.00354 -16.44996 -15.88345 -15.49553 -15.11997 -14.60096 -13.83899 -13.39396 -13.19812 -12.97715 -12.81364 -12.44036 -12.11643 -11.50013 -11.28190 -11.25868 -11.07671 -10.69058 -10.56992 -10.48345 -10.32619 -9.99865 -9.58357 -9.47353 -8.51316 -8.20827 -6.34334 -3.85698 3.00051 3.04338 3.12961 3.62296 4.07174 4.09721 4.50228 4.83079 5.03068 5.17412 5.30763 5.34278 5.46604 5.57505 5.62517 5.73737 5.81847 5.90162 6.04468 6.07366 6.21663 6.38025 6.46380 6.54695 6.79586 7.13810 7.53627 8.11018 8.55581 8.91272 9.39024 9.78518 10.78641 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037193 B = 0.009643 C = 0.009058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.653243 B = 2903.074007 C = 3090.614299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.096 3.904 4 H 0.068 0.932 5 O -0.371 6.371 6 C 0.048 3.952 7 C -0.139 4.139 8 C -0.139 4.139 9 H 0.086 0.914 10 C 0.465 3.535 11 O -0.571 6.571 12 N -0.588 5.588 13 C -0.306 4.306 14 H 0.120 0.880 15 C 0.043 3.957 16 N -0.879 5.879 17 Si 0.877 3.123 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.269 1.269 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.370 0.630 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 12.428 -0.726 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.038 3.962 4 H 0.086 0.914 5 O -0.290 6.290 6 C -0.029 4.029 7 C -0.177 4.177 8 C -0.162 4.162 9 H 0.104 0.896 10 C 0.252 3.748 11 O -0.454 6.454 12 N -0.226 5.226 13 C -0.434 4.434 14 H 0.138 0.862 15 C -0.160 4.160 16 N -0.519 5.519 17 Si 0.703 3.297 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.195 1.195 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.203 0.797 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.265 11.774 -1.416 13.412 hybrid contribution 0.145 0.648 1.669 1.796 sum -6.120 12.422 0.254 13.850 Atomic orbital electron populations 1.21698 0.95819 1.01308 1.01344 1.21876 0.96003 0.94494 1.04696 1.22693 0.92139 0.94637 0.86747 0.91404 1.88909 1.43367 1.57095 1.39622 1.23501 0.86041 0.92364 1.00960 1.23087 0.97790 0.99126 0.97717 1.22686 0.96479 0.96894 1.00109 0.89552 1.19292 0.83761 0.87378 0.84414 1.90551 1.56954 1.66105 1.31779 1.42307 1.59045 1.15075 1.06151 1.19445 1.39506 0.87885 0.96604 0.86227 1.25038 0.97276 0.95801 0.97917 1.69618 1.43351 1.11769 1.27165 0.86713 0.79203 0.79704 0.84079 1.19490 1.20112 1.19492 0.92483 0.92860 0.93409 0.89694 0.90070 0.92681 0.89180 0.90554 0.88457 0.79677 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.83 37.16 0.37 -1.78 16 2 C -0.13 -2.39 4.47 -26.73 -0.12 -2.51 16 3 C 0.10 1.57 3.42 -26.15 -0.09 1.48 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 O -0.37 -6.10 10.87 -35.23 -0.38 -6.48 16 6 C 0.05 0.64 7.72 38.21 0.29 0.93 16 7 C -0.14 -2.13 6.65 -24.73 -0.16 -2.30 16 8 C -0.14 -2.40 3.42 -90.25 -0.31 -2.71 16 9 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 10 C 0.47 10.49 4.69 -10.99 -0.05 10.44 16 11 O -0.57 -15.16 14.57 5.55 0.08 -15.08 16 12 N -0.59 -13.87 4.67 -10.96 -0.05 -13.92 16 13 C -0.31 -8.54 10.16 -14.93 -0.15 -8.69 16 14 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 15 C 0.04 1.17 5.50 -17.47 -0.10 1.07 16 16 N -0.88 -25.49 13.96 55.50 0.77 -24.72 16 17 Si 0.88 19.21 27.73 -169.99 -4.71 14.49 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 21 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.78 7.13 -51.93 -0.37 1.41 16 25 H 0.08 1.56 7.02 -51.93 -0.36 1.19 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.75 6.95 -51.93 -0.36 1.39 16 30 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 31 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 255.87 15.07 3.86 3.86 Total: -1.00 -31.33 255.87 -5.02 -36.34 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -4.26 Total: 9.57 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.32 Total: -4.06 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.72 Total: -38.64 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.30 Total: -21.56 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.33 -5.02 -36.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233937823.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.476 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds