Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47294 * 2 1 4 4 H 1.08996 * 109.98864 * 53.84094 * 3 2 1 5 5 O 1.44043 * 109.92658 * 292.59231 * 3 2 1 6 6 C 1.44382 * 106.98128 * 214.02240 * 5 3 2 7 7 C 1.54995 * 103.48813 * 40.13875 * 6 5 3 8 8 C 1.54105 * 109.87705 * 174.92590 * 3 2 1 9 9 H 1.09002 * 110.48162 * 240.26126 * 8 3 2 10 10 C 1.50699 * 110.48815 * 2.77514 * 8 3 2 11 11 O 1.21293 * 119.99685 * 83.43672 * 10 8 3 12 12 N 1.34777 * 120.00212 * 263.43260 * 10 8 3 13 13 C 1.37093 * 119.99805 * 179.72745 * 12 10 8 14 14 H 1.08002 * 120.00280 * 0.02562 * 13 12 10 15 15 C 1.38957 * 120.00129 * 179.97438 * 13 12 10 16 16 N 1.31408 * 120.00189 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99621 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47201 * 89.99694 * 17 15 13 19 19 H 1.48496 * 109.46967 * 210.00020 * 17 15 13 20 20 H 1.48501 * 109.47052 * 329.99810 * 17 15 13 21 21 H 1.09001 * 109.46812 * 59.99842 * 1 2 3 22 22 H 1.09000 * 109.47521 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47117 * 300.00016 * 1 2 3 24 24 H 1.09001 * 109.47117 * 239.99983 * 2 1 3 25 25 H 1.09001 * 109.46812 * 120.00158 * 2 1 3 26 26 H 1.08993 * 110.61619 * 281.63713 * 6 5 3 27 27 H 1.09002 * 110.61622 * 158.63647 * 6 5 3 28 28 H 1.08994 * 110.90624 * 204.77736 * 7 6 5 29 29 H 1.09007 * 110.90747 * 81.17746 * 7 6 5 30 30 H 0.97001 * 119.99728 * 359.97438 * 12 10 8 31 31 H 0.97000 * 119.99846 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5944 1.9953 0.8270 5 8 1.7132 2.0788 -1.2503 6 6 2.7900 2.9917 -1.5530 7 6 4.0589 2.2047 -1.1373 8 6 3.5757 1.4553 0.1282 9 1 3.8789 1.9909 1.0278 10 6 4.1152 0.0483 0.1464 11 8 4.3072 -0.5411 -0.8962 12 7 4.3843 -0.5551 1.3211 13 6 4.8699 -1.8371 1.3377 14 1 5.0370 -2.3634 0.4095 15 6 5.1479 -2.4591 2.5488 16 7 5.6128 -3.6881 2.5647 17 14 4.8594 -1.5487 4.1542 18 1 3.4743 -1.8029 4.6254 19 1 5.8255 -2.0275 5.1752 20 1 5.0491 -0.0918 3.9380 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.6953 3.9051 -0.9658 27 1 2.8118 3.2197 -2.6187 28 1 4.8771 2.8840 -0.8984 29 1 4.3536 1.5020 -1.9167 30 1 4.2311 -0.0836 2.1548 31 1 5.8065 -4.1224 3.4102 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233937823.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -114.480986 kcal Electronic energy + Delta-G solvation = -14843.212288 eV Core-core repulsion = 12316.383338 eV Total energy + Delta-G solvation = -2526.828950 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.42961 -39.21399 -36.05918 -34.56230 -33.76855 -33.02236 -29.43970 -27.04639 -24.72385 -23.02486 -22.49750 -21.07309 -19.80952 -17.94225 -17.34320 -16.89921 -16.70348 -16.09268 -15.51609 -15.18888 -14.60092 -14.49427 -14.31332 -14.19846 -13.50512 -12.98110 -12.88094 -12.51722 -12.43114 -12.35440 -12.00488 -11.88983 -11.84089 -11.61423 -11.44091 -10.73780 -10.32015 -10.26020 -8.43232 -6.04255 1.28334 1.33556 1.42686 1.87415 2.21162 2.79355 2.94964 3.11944 3.58285 3.73530 4.01666 4.13260 4.19652 4.34615 4.41465 4.44447 4.54343 4.76975 4.84055 4.89943 4.97512 5.11457 5.21766 5.26356 5.40474 5.53119 5.92617 5.97550 6.55517 6.84954 7.36058 7.92098 8.74363 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037193 B = 0.009643 C = 0.009058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.653243 B = 2903.074007 C = 3090.614299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 C 0.100 3.900 4 H 0.110 0.890 5 O -0.391 6.391 6 C 0.051 3.949 7 C -0.142 4.142 8 C -0.138 4.138 9 H 0.128 0.872 10 C 0.467 3.533 11 O -0.621 6.621 12 N -0.587 5.587 13 C -0.327 4.327 14 H 0.054 0.946 15 C -0.013 4.013 16 N -0.933 5.933 17 Si 0.960 3.040 18 H -0.255 1.255 19 H -0.274 1.274 20 H -0.230 1.230 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.389 0.611 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.552 16.191 1.537 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.174 4.174 3 C 0.042 3.958 4 H 0.127 0.873 5 O -0.310 6.310 6 C -0.025 4.025 7 C -0.180 4.180 8 C -0.159 4.159 9 H 0.146 0.854 10 C 0.256 3.744 11 O -0.507 6.507 12 N -0.227 5.227 13 C -0.456 4.456 14 H 0.072 0.928 15 C -0.212 4.212 16 N -0.573 5.573 17 Si 0.780 3.220 18 H -0.179 1.179 19 H -0.199 1.199 20 H -0.154 1.154 21 H 0.077 0.923 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.076 0.924 30 H 0.225 0.775 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.532 15.567 0.830 17.313 hybrid contribution 0.565 -0.595 0.793 1.141 sum -6.968 14.972 1.624 16.593 Atomic orbital electron populations 1.21641 0.93303 1.01711 1.02729 1.21826 0.98320 0.95698 1.01547 1.22767 0.91169 0.93732 0.88141 0.87285 1.88890 1.44421 1.57921 1.39799 1.23732 0.83527 0.92531 1.02692 1.23128 1.00136 0.98986 0.95714 1.22820 0.97327 0.92838 1.02943 0.85399 1.20426 0.81523 0.89309 0.83151 1.90534 1.58342 1.68093 1.33723 1.42110 1.59450 1.13666 1.07457 1.18983 1.41740 0.90044 0.94877 0.92793 1.26103 0.95949 0.96614 1.02523 1.69802 1.44521 1.14135 1.28871 0.85432 0.79600 0.80062 0.76920 1.17929 1.19934 1.15371 0.92254 0.93093 0.90693 0.94396 0.91762 0.88833 0.87819 0.87449 0.92395 0.77535 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.83 71.98 0.71 -3.13 16 2 C -0.14 -4.84 4.47 30.59 0.14 -4.70 16 3 C 0.10 2.95 3.42 30.97 0.11 3.06 16 4 H 0.11 2.43 8.14 -2.39 -0.02 2.42 16 5 O -0.39 -11.72 10.87 -148.98 -1.62 -13.34 16 6 C 0.05 1.16 7.72 72.66 0.56 1.72 16 7 C -0.14 -4.00 6.65 31.89 0.21 -3.79 16 8 C -0.14 -4.35 3.42 -10.55 -0.04 -4.39 16 9 H 0.13 3.03 8.14 -2.39 -0.02 3.02 16 10 C 0.47 21.34 4.69 87.66 0.41 21.76 16 11 O -0.62 -35.08 14.57 -3.07 -0.04 -35.13 16 12 N -0.59 -27.71 4.67 -306.98 -1.44 -29.14 16 13 C -0.33 -19.17 10.16 84.04 0.85 -18.32 16 14 H 0.05 3.79 7.39 -2.91 -0.02 3.76 16 15 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 16 N -0.93 -56.24 13.96 21.66 0.30 -55.93 16 17 Si 0.96 38.41 27.73 68.60 1.90 40.32 16 18 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 21 H 0.06 1.63 7.92 -2.39 -0.02 1.61 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.67 7.13 -2.39 -0.02 1.65 16 25 H 0.06 2.46 7.02 -2.39 -0.02 2.44 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.11 6.95 -2.38 -0.02 2.09 16 30 H 0.39 15.23 5.76 -92.71 -0.53 14.69 16 31 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -75.32 255.87 3.06 -72.27 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.53 Total: 29.01 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 3.42 Total: -8.05 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -1.13 Total: -85.08 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -1.66 Total: -48.47 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.90 Total: 40.32 kcal Total: -75.32 3.06 -72.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233937823.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.216 kcal (2) G-P(sol) polarization free energy of solvation -75.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds