Wall clock time and date at job start Mon Mar 30 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47043 * 2 1 4 4 H 1.08998 * 109.87084 * 305.99995 * 3 2 1 5 5 O 1.43740 * 110.00882 * 67.08805 * 3 2 1 6 6 C 1.44380 * 106.98151 * 146.00850 * 5 3 2 7 7 C 1.55001 * 103.48593 * 319.94150 * 6 5 3 8 8 C 1.54103 * 109.87867 * 184.99276 * 3 2 1 9 9 H 1.08996 * 110.48598 * 357.20477 * 8 3 2 10 10 C 1.50700 * 110.48620 * 119.71591 * 8 3 2 11 11 O 1.21293 * 120.00282 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00075 * 179.97438 * 10 8 3 13 13 C 1.37104 * 120.00173 * 180.02562 * 12 10 8 14 14 H 1.08002 * 119.99666 * 359.97438 * 13 12 10 15 15 C 1.38945 * 120.00001 * 180.27893 * 13 12 10 16 16 N 1.31407 * 120.00135 * 179.72366 * 15 13 12 17 17 Si 1.86800 * 120.00194 * 359.72088 * 15 13 12 18 18 H 1.48500 * 109.47210 * 89.99937 * 17 15 13 19 19 H 1.48496 * 109.47530 * 210.00374 * 17 15 13 20 20 H 1.48501 * 109.47312 * 330.00618 * 17 15 13 21 21 H 1.08996 * 109.47580 * 300.00949 * 1 2 3 22 22 H 1.09006 * 109.46451 * 60.00877 * 1 2 3 23 23 H 1.08997 * 109.47301 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47580 * 239.99051 * 2 1 3 25 25 H 1.09006 * 109.46451 * 119.99123 * 2 1 3 26 26 H 1.09002 * 110.61756 * 78.43302 * 6 5 3 27 27 H 1.08998 * 110.62107 * 201.43838 * 6 5 3 28 28 H 1.09003 * 110.90655 * 278.81954 * 7 6 5 29 29 H 1.09002 * 110.90897 * 155.22155 * 7 6 5 30 30 H 0.97000 * 120.00140 * 0.02562 * 12 10 8 31 31 H 0.97004 * 120.00486 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9926 -0.8293 5 8 1.7081 2.0814 1.2441 6 6 2.7836 2.9953 1.5488 7 6 4.0542 2.2076 1.1394 8 6 3.5758 1.4553 -0.1261 9 1 3.9660 0.4377 -0.1379 10 6 3.9967 2.1947 -1.3700 11 8 3.1582 2.6759 -2.1025 12 7 5.3049 2.3222 -1.6680 13 6 5.6878 2.9953 -2.7993 14 1 4.9411 3.4231 -3.4519 15 6 7.0363 3.1217 -3.1096 16 7 7.4032 3.7622 -4.1967 17 14 8.3278 2.3813 -1.9812 18 1 8.6158 0.9877 -2.4057 19 1 9.5719 3.1886 -2.0557 20 1 7.8223 2.3787 -0.5848 21 1 -0.3634 0.5139 0.8898 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8898 25 1 1.8932 -0.5137 0.8901 26 1 2.6909 3.9073 0.9591 27 1 2.8013 3.2257 2.6140 28 1 4.3461 1.5067 1.9215 29 1 4.8732 2.8866 0.9020 30 1 5.9755 1.9377 -1.0820 31 1 8.3446 3.8508 -4.4132 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234087685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:11 Heat of formation + Delta-G solvation = -94.502207 kcal Electronic energy + Delta-G solvation = -14617.734696 eV Core-core repulsion = 12091.772090 eV Total energy + Delta-G solvation = -2525.962605 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88811 -37.59332 -34.11566 -33.32696 -32.19714 -31.36701 -28.08866 -25.32829 -23.24501 -21.97314 -20.79069 -19.25136 -18.38431 -16.25164 -15.83287 -15.41411 -15.19998 -14.66332 -13.73668 -13.38967 -13.33267 -13.04710 -12.82307 -12.70098 -12.29451 -11.61782 -11.40675 -11.27852 -11.01840 -10.83114 -10.64573 -10.51319 -10.49394 -10.01892 -9.64572 -9.35926 -8.54474 -8.25283 -6.37168 -3.89030 2.97875 3.02618 3.11072 3.62031 4.04634 4.10151 4.45614 4.82284 5.00551 5.16920 5.22413 5.30336 5.37796 5.47142 5.62368 5.79376 5.85951 5.90786 6.02310 6.03850 6.12619 6.14028 6.27688 6.41815 6.56527 7.16913 7.50615 8.08057 8.51739 8.87599 9.35763 9.74033 10.75676 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044935 B = 0.008330 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.974870 B = 3360.712843 C = 3557.077432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.086 3.914 4 H 0.097 0.903 5 O -0.377 6.377 6 C 0.050 3.950 7 C -0.148 4.148 8 C -0.137 4.137 9 H 0.097 0.903 10 C 0.456 3.544 11 O -0.573 6.573 12 N -0.584 5.584 13 C -0.309 4.309 14 H 0.120 0.880 15 C 0.043 3.957 16 N -0.878 5.878 17 Si 0.878 3.122 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.269 1.269 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.371 0.629 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.965 -6.384 11.697 14.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C 0.028 3.972 4 H 0.115 0.885 5 O -0.296 6.296 6 C -0.026 4.026 7 C -0.186 4.186 8 C -0.159 4.159 9 H 0.115 0.885 10 C 0.242 3.758 11 O -0.457 6.457 12 N -0.221 5.221 13 C -0.437 4.437 14 H 0.138 0.862 15 C -0.160 4.160 16 N -0.518 5.518 17 Si 0.704 3.296 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.194 1.194 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.204 0.796 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.532 -6.014 11.159 13.831 hybrid contribution 1.566 -0.491 0.618 1.754 sum -3.966 -6.505 11.778 14.027 Atomic orbital electron populations 1.21698 0.95451 1.00997 1.02305 1.21689 0.96713 0.95154 1.02153 1.22824 0.92306 0.94198 0.87854 0.88533 1.88781 1.43689 1.57013 1.40142 1.23480 0.85313 0.93212 1.00638 1.23164 0.99216 0.99700 0.96534 1.22592 0.97409 1.00844 0.95024 0.88523 1.19499 0.83068 0.85521 0.87759 1.90538 1.50631 1.52257 1.52255 1.42196 1.05623 1.50546 1.23766 1.19467 0.93737 1.30780 0.99732 0.86204 1.25045 0.97106 0.97247 0.96607 1.69617 1.17420 1.40679 1.24046 0.86695 0.82222 0.80066 0.80600 1.19517 1.20028 1.19435 0.92255 0.92635 0.93165 0.90827 0.91735 0.91893 0.89300 0.90270 0.89790 0.79566 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.83 37.16 0.37 -1.50 16 2 C -0.12 -1.66 5.42 -26.73 -0.15 -1.81 16 3 C 0.09 1.45 3.02 -26.16 -0.08 1.37 16 4 H 0.10 1.92 6.43 -51.93 -0.33 1.59 16 5 O -0.38 -6.20 10.85 -35.23 -0.38 -6.58 16 6 C 0.05 0.74 7.72 38.21 0.29 1.03 16 7 C -0.15 -2.18 6.70 -24.72 -0.17 -2.34 16 8 C -0.14 -2.35 3.07 -90.24 -0.28 -2.63 16 9 H 0.10 1.45 7.70 -51.93 -0.40 1.05 16 10 C 0.46 10.36 7.01 -10.98 -0.08 10.28 16 11 O -0.57 -15.35 14.83 5.55 0.08 -15.27 16 12 N -0.58 -13.84 4.94 -10.96 -0.05 -13.90 16 13 C -0.31 -8.67 10.16 -14.93 -0.15 -8.82 16 14 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 15 C 0.04 1.18 5.50 -17.47 -0.10 1.08 16 16 N -0.88 -25.42 13.96 55.50 0.77 -24.65 16 17 Si 0.88 19.15 27.73 -169.99 -4.71 14.43 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 21 H 0.06 0.76 7.91 -51.93 -0.41 0.35 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.29 7.74 -51.93 -0.40 0.88 16 30 H 0.37 7.77 5.77 -40.82 -0.24 7.53 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -31.33 259.70 -5.01 -36.34 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.30 Total: 9.04 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -0.33 Total: -3.32 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.72 Total: -38.55 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.30 Total: -21.85 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.33 -5.01 -36.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234087685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.166 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds