Wall clock time and date at job start Mon Mar 30 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47043 * 2 1 4 4 H 1.08998 * 109.87084 * 305.99995 * 3 2 1 5 5 O 1.43740 * 110.00882 * 67.08805 * 3 2 1 6 6 C 1.44380 * 106.98151 * 146.00850 * 5 3 2 7 7 C 1.55001 * 103.48593 * 319.94150 * 6 5 3 8 8 C 1.54103 * 109.87867 * 184.99276 * 3 2 1 9 9 H 1.08996 * 110.48598 * 357.20477 * 8 3 2 10 10 C 1.50700 * 110.48620 * 119.71591 * 8 3 2 11 11 O 1.21293 * 120.00282 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00075 * 179.97438 * 10 8 3 13 13 C 1.37104 * 120.00173 * 180.02562 * 12 10 8 14 14 H 1.08002 * 119.99666 * 359.97438 * 13 12 10 15 15 C 1.38945 * 120.00001 * 180.27893 * 13 12 10 16 16 N 1.31407 * 120.00135 * 179.72366 * 15 13 12 17 17 Si 1.86800 * 120.00194 * 359.72088 * 15 13 12 18 18 H 1.48500 * 109.47210 * 89.99937 * 17 15 13 19 19 H 1.48496 * 109.47530 * 210.00374 * 17 15 13 20 20 H 1.48501 * 109.47312 * 330.00618 * 17 15 13 21 21 H 1.08996 * 109.47580 * 300.00949 * 1 2 3 22 22 H 1.09006 * 109.46451 * 60.00877 * 1 2 3 23 23 H 1.08997 * 109.47301 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47580 * 239.99051 * 2 1 3 25 25 H 1.09006 * 109.46451 * 119.99123 * 2 1 3 26 26 H 1.09002 * 110.61756 * 78.43302 * 6 5 3 27 27 H 1.08998 * 110.62107 * 201.43838 * 6 5 3 28 28 H 1.09003 * 110.90655 * 278.81954 * 7 6 5 29 29 H 1.09002 * 110.90897 * 155.22155 * 7 6 5 30 30 H 0.97000 * 120.00140 * 0.02562 * 12 10 8 31 31 H 0.97004 * 120.00486 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9926 -0.8293 5 8 1.7081 2.0814 1.2441 6 6 2.7836 2.9953 1.5488 7 6 4.0542 2.2076 1.1394 8 6 3.5758 1.4553 -0.1261 9 1 3.9660 0.4377 -0.1379 10 6 3.9967 2.1947 -1.3700 11 8 3.1582 2.6759 -2.1025 12 7 5.3049 2.3222 -1.6680 13 6 5.6878 2.9953 -2.7993 14 1 4.9411 3.4231 -3.4519 15 6 7.0363 3.1217 -3.1096 16 7 7.4032 3.7622 -4.1967 17 14 8.3278 2.3813 -1.9812 18 1 8.6158 0.9877 -2.4057 19 1 9.5719 3.1886 -2.0557 20 1 7.8223 2.3787 -0.5848 21 1 -0.3634 0.5139 0.8898 22 1 -0.3632 0.5137 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8898 25 1 1.8932 -0.5137 0.8901 26 1 2.6909 3.9073 0.9591 27 1 2.8013 3.2257 2.6140 28 1 4.3461 1.5067 1.9215 29 1 4.8732 2.8866 0.9020 30 1 5.9755 1.9377 -1.0820 31 1 8.3446 3.8508 -4.4132 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234087685.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:11 Heat of formation + Delta-G solvation = -117.816015 kcal Electronic energy + Delta-G solvation = -14618.745658 eV Core-core repulsion = 12091.772090 eV Total energy + Delta-G solvation = -2526.973568 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38045 -39.27941 -36.12409 -34.46505 -34.00147 -32.99263 -29.31304 -27.23294 -24.57656 -23.32352 -22.07167 -21.14811 -20.20466 -17.91993 -17.22247 -17.00681 -16.50849 -16.31790 -15.39977 -15.18078 -14.63213 -14.45642 -14.35979 -14.08022 -13.85818 -13.09681 -12.86718 -12.52621 -12.46622 -12.23498 -12.07087 -11.90816 -11.71361 -11.65293 -11.57198 -10.72287 -10.36591 -10.31288 -8.45978 -6.08154 1.27651 1.32592 1.42350 1.83983 2.19542 2.73119 2.94317 3.08381 3.58935 3.73533 3.93789 4.07728 4.27130 4.29146 4.39647 4.48904 4.62106 4.80732 4.88329 4.90026 5.01098 5.09433 5.10536 5.29910 5.43527 5.48906 5.87266 5.94412 6.51437 6.80384 7.31409 7.86106 8.71390 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.044935 B = 0.008330 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.974870 B = 3360.712843 C = 3557.077432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.085 3.915 4 H 0.053 0.947 5 O -0.381 6.381 6 C 0.043 3.957 7 C -0.141 4.141 8 C -0.131 4.131 9 H 0.132 0.868 10 C 0.455 3.545 11 O -0.624 6.624 12 N -0.581 5.581 13 C -0.334 4.334 14 H 0.055 0.945 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.962 3.038 18 H -0.255 1.255 19 H -0.272 1.272 20 H -0.229 1.229 21 H 0.056 0.944 22 H 0.040 0.960 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.391 0.609 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.631 -8.670 15.153 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.027 3.973 4 H 0.071 0.929 5 O -0.300 6.300 6 C -0.033 4.033 7 C -0.179 4.179 8 C -0.152 4.152 9 H 0.149 0.851 10 C 0.243 3.757 11 O -0.510 6.510 12 N -0.221 5.221 13 C -0.464 4.464 14 H 0.073 0.927 15 C -0.211 4.211 16 N -0.570 5.570 17 Si 0.781 3.219 18 H -0.180 1.180 19 H -0.197 1.197 20 H -0.153 1.153 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.097 0.903 30 H 0.226 0.774 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.216 -8.306 14.636 17.348 hybrid contribution 1.022 0.310 -0.544 1.198 sum -3.193 -7.996 14.092 16.514 Atomic orbital electron populations 1.21686 0.94824 1.02325 1.01468 1.21696 0.97344 0.92939 1.03352 1.22733 0.92004 0.95654 0.86951 0.92872 1.88784 1.44633 1.57201 1.39386 1.23670 0.85118 0.92042 1.02494 1.23242 0.98649 1.00052 0.95926 1.22640 0.97776 1.01921 0.92895 0.85066 1.20657 0.82160 0.84143 0.88757 1.90525 1.52026 1.54002 1.54439 1.41986 1.06562 1.50618 1.22906 1.19035 0.93307 1.32803 1.01207 0.92684 1.26126 0.99449 0.97022 0.98459 1.69796 1.18549 1.42128 1.26551 0.85414 0.77667 0.79212 0.79609 1.17965 1.19733 1.15253 0.92521 0.94105 0.90722 0.90689 0.89268 0.94503 0.85507 0.85936 0.90340 0.77355 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.83 71.98 0.71 -2.73 16 2 C -0.12 -2.94 5.42 30.59 0.17 -2.77 16 3 C 0.08 2.77 3.02 30.97 0.09 2.86 16 4 H 0.05 2.21 6.43 -2.39 -0.02 2.20 16 5 O -0.38 -11.76 10.85 -148.98 -1.62 -13.37 16 6 C 0.04 1.16 7.72 72.67 0.56 1.72 16 7 C -0.14 -3.59 6.70 31.89 0.21 -3.37 16 8 C -0.13 -4.19 3.07 -10.55 -0.03 -4.22 16 9 H 0.13 3.36 7.70 -2.39 -0.02 3.34 16 10 C 0.45 20.89 7.01 87.66 0.61 21.50 16 11 O -0.62 -35.35 14.83 -3.07 -0.05 -35.39 16 12 N -0.58 -27.44 4.94 -306.98 -1.52 -28.95 16 13 C -0.33 -19.60 10.16 84.04 0.85 -18.74 16 14 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 15 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 16 N -0.93 -55.68 13.96 21.66 0.30 -55.38 16 17 Si 0.96 38.01 27.73 68.60 1.90 39.91 16 18 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 19 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 20 H -0.23 -7.55 6.52 99.48 0.65 -6.90 16 21 H 0.06 1.36 7.91 -2.39 -0.02 1.34 16 22 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.08 2.12 7.74 -2.39 -0.02 2.11 16 30 H 0.39 15.22 5.77 -92.71 -0.53 14.68 16 31 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -74.13 259.70 3.20 -70.93 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.53 Total: 28.16 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 3.64 Total: -5.91 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -1.21 Total: -84.34 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -1.66 Total: -48.77 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Total: -74.13 3.20 -70.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234087685.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.882 kcal (2) G-P(sol) polarization free energy of solvation -74.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds