Wall clock time and date at job start Mon Mar 30 2020 03:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 H 1.09012 * 110.41865 * 307.72553 * 3 2 1 5 5 O 1.44779 * 110.48956 * 70.17741 * 3 2 1 6 6 C 1.44425 * 105.30036 * 159.32700 * 5 3 2 7 7 C 1.54482 * 104.79693 * 319.45598 * 6 5 3 8 8 C 1.54475 * 110.37470 * 185.41580 * 3 2 1 9 9 H 1.09000 * 110.51123 * 98.40516 * 8 3 2 10 10 C 1.50705 * 110.50990 * 335.83392 * 8 3 2 11 11 O 1.21287 * 119.99922 * 280.05598 * 10 8 3 12 12 N 1.34778 * 119.99759 * 100.05220 * 10 8 3 13 13 C 1.37094 * 119.99709 * 179.97438 * 12 10 8 14 14 H 1.08001 * 120.00391 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00048 * 179.72563 * 13 12 10 16 16 N 1.31414 * 120.00351 * 180.27573 * 15 13 12 17 17 Si 1.86799 * 119.99978 * 0.27917 * 15 13 12 18 18 H 1.48495 * 109.47031 * 89.99657 * 17 15 13 19 19 H 1.48500 * 109.47408 * 210.00057 * 17 15 13 20 20 H 1.48503 * 109.46790 * 329.99884 * 17 15 13 21 21 H 1.08999 * 109.47347 * 60.00019 * 1 2 3 22 22 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47022 * 300.00032 * 1 2 3 24 24 H 1.08997 * 109.46666 * 240.00279 * 2 1 3 25 25 H 1.08999 * 109.47347 * 119.99981 * 2 1 3 26 26 H 1.09001 * 110.37705 * 200.62685 * 6 5 3 27 27 H 1.08993 * 110.37281 * 78.28434 * 6 5 3 28 28 H 1.08994 * 110.51279 * 265.32554 * 7 6 5 29 29 H 1.09003 * 110.62315 * 142.68198 * 7 6 5 30 30 H 0.96998 * 120.00290 * 0.02562 * 12 10 8 31 31 H 0.96998 * 120.00210 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5774 2.0094 -0.8081 5 8 1.7754 2.0736 1.2758 6 6 2.6947 3.1850 1.3493 7 6 4.0189 2.6406 0.7691 8 6 3.5785 1.4690 -0.1367 9 1 3.8669 1.6565 -1.1710 10 6 4.1742 0.1729 0.3496 11 8 4.3239 -0.0176 1.5380 12 7 4.5405 -0.7746 -0.5362 13 6 5.0829 -1.9534 -0.0939 14 1 5.2163 -2.1231 0.9643 15 6 5.4553 -2.9326 -1.0068 16 7 5.9702 -4.0648 -0.5826 17 14 5.2241 -2.6396 -2.8372 18 1 6.4456 -2.0059 -3.3952 19 1 4.9832 -3.9363 -3.5196 20 1 4.0594 -1.7435 -3.0517 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.8333 3.4951 2.3850 27 1 2.3313 4.0184 0.7482 28 1 4.6675 2.2826 1.5685 29 1 4.5251 3.4075 0.1826 30 1 4.4210 -0.6221 -1.4867 31 1 6.2305 -4.7482 -1.2199 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234134221.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:13 Heat of formation + Delta-G solvation = -90.909399 kcal Electronic energy + Delta-G solvation = -14857.860452 eV Core-core repulsion = 12332.053642 eV Total energy + Delta-G solvation = -2525.806810 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.89093 -37.47388 -34.00399 -33.30367 -31.87197 -31.45902 -28.17895 -25.12236 -23.51565 -21.46416 -21.07914 -19.17621 -18.01198 -16.58618 -15.75359 -15.31596 -15.14910 -14.66257 -13.79582 -13.44644 -13.21558 -12.91006 -12.74699 -12.38398 -12.16711 -11.41841 -11.34401 -11.22882 -11.14532 -10.68024 -10.53658 -10.51632 -10.35455 -9.97783 -9.61645 -9.45625 -8.47224 -8.18413 -6.32000 -3.83134 3.00920 3.05440 3.13991 3.65220 4.08964 4.17262 4.53024 4.84492 5.01872 5.22227 5.29654 5.35516 5.43654 5.57153 5.59521 5.70235 5.85614 5.87080 6.04249 6.06810 6.17794 6.28756 6.44301 6.49040 6.70539 7.13094 7.56403 8.14001 8.58755 8.94264 9.41880 9.82650 10.81137 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036494 B = 0.009916 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.074231 B = 2822.965344 C = 3077.418446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.094 3.906 4 H 0.069 0.931 5 O -0.364 6.364 6 C 0.050 3.950 7 C -0.139 4.139 8 C -0.138 4.138 9 H 0.087 0.913 10 C 0.465 3.535 11 O -0.568 6.568 12 N -0.589 5.589 13 C -0.304 4.304 14 H 0.120 0.880 15 C 0.042 3.958 16 N -0.881 5.881 17 Si 0.877 3.123 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.269 1.269 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.370 0.630 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 11.838 -4.155 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.036 3.964 4 H 0.087 0.913 5 O -0.283 6.283 6 C -0.027 4.027 7 C -0.177 4.177 8 C -0.161 4.161 9 H 0.105 0.895 10 C 0.251 3.749 11 O -0.451 6.451 12 N -0.227 5.227 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.161 4.161 16 N -0.521 5.521 17 Si 0.703 3.297 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.194 1.194 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.203 0.797 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.095 11.401 -3.238 13.813 hybrid contribution 0.154 0.115 -1.779 1.789 sum -6.941 11.515 -5.017 14.351 Atomic orbital electron populations 1.21704 0.95619 1.01445 1.01461 1.21698 0.96123 0.94255 1.04330 1.22948 0.92122 0.94804 0.86506 0.91302 1.89196 1.58306 1.43744 1.37020 1.23306 0.88495 0.89457 1.01470 1.22872 0.98785 0.96130 0.99939 1.22676 0.96810 0.96046 1.00539 0.89510 1.19357 0.83665 0.85073 0.86827 1.90562 1.58451 1.80044 1.16048 1.42301 1.56909 1.16340 1.07138 1.19444 1.36592 0.90406 0.96870 0.86284 1.25034 0.97288 0.95353 0.98405 1.69620 1.41453 1.06034 1.34949 0.86710 0.78793 0.78664 0.85488 1.19627 1.20134 1.19450 0.93355 0.92745 0.92341 0.90583 0.89578 0.89323 0.92930 0.88993 0.90867 0.79743 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.86 37.16 0.37 -1.72 16 2 C -0.13 -2.21 4.60 -26.73 -0.12 -2.33 16 3 C 0.09 1.54 3.17 -25.96 -0.08 1.45 16 4 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 5 O -0.36 -6.34 11.18 -35.23 -0.39 -6.74 16 6 C 0.05 0.70 7.63 37.94 0.29 0.99 16 7 C -0.14 -2.13 6.59 -25.16 -0.17 -2.30 16 8 C -0.14 -2.39 3.42 -90.21 -0.31 -2.70 16 9 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 10 C 0.46 10.64 4.73 -10.98 -0.05 10.59 16 11 O -0.57 -15.47 15.32 5.55 0.09 -15.38 16 12 N -0.59 -14.00 4.88 -10.96 -0.05 -14.05 16 13 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 14 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 15 C 0.04 1.15 5.50 -17.46 -0.10 1.06 16 16 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 17 Si 0.88 19.30 27.74 -169.99 -4.72 14.58 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.37 6.51 56.52 0.37 -5.00 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.85 8.03 -51.93 -0.42 0.43 16 24 H 0.08 1.32 7.86 -51.93 -0.41 0.92 16 25 H 0.09 1.83 7.16 -51.93 -0.37 1.46 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.65 7.05 -51.93 -0.37 1.28 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.37 7.77 5.74 -40.82 -0.23 7.54 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 257.96 15.07 3.89 3.89 Total: -1.00 -32.10 257.96 -5.05 -37.15 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.31 Total: 9.16 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.32 Total: -3.69 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.72 Total: -38.97 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.31 Total: -22.12 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.72 Total: 14.58 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.10 -5.05 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234134221.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.759 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds