Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 H 1.09012 * 110.41865 * 307.72553 * 3 2 1 5 5 O 1.44779 * 110.48956 * 70.17741 * 3 2 1 6 6 C 1.44425 * 105.30036 * 159.32700 * 5 3 2 7 7 C 1.54482 * 104.79693 * 319.45598 * 6 5 3 8 8 C 1.54475 * 110.37470 * 185.41580 * 3 2 1 9 9 H 1.09000 * 110.51123 * 98.40516 * 8 3 2 10 10 C 1.50705 * 110.50990 * 335.83392 * 8 3 2 11 11 O 1.21287 * 119.99922 * 280.05598 * 10 8 3 12 12 N 1.34778 * 119.99759 * 100.05220 * 10 8 3 13 13 C 1.37094 * 119.99709 * 179.97438 * 12 10 8 14 14 H 1.08001 * 120.00391 * 0.02562 * 13 12 10 15 15 C 1.38956 * 120.00048 * 179.72563 * 13 12 10 16 16 N 1.31414 * 120.00351 * 180.27573 * 15 13 12 17 17 Si 1.86799 * 119.99978 * 0.27917 * 15 13 12 18 18 H 1.48495 * 109.47031 * 89.99657 * 17 15 13 19 19 H 1.48500 * 109.47408 * 210.00057 * 17 15 13 20 20 H 1.48503 * 109.46790 * 329.99884 * 17 15 13 21 21 H 1.08999 * 109.47347 * 60.00019 * 1 2 3 22 22 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47022 * 300.00032 * 1 2 3 24 24 H 1.08997 * 109.46666 * 240.00279 * 2 1 3 25 25 H 1.08999 * 109.47347 * 119.99981 * 2 1 3 26 26 H 1.09001 * 110.37705 * 200.62685 * 6 5 3 27 27 H 1.08993 * 110.37281 * 78.28434 * 6 5 3 28 28 H 1.08994 * 110.51279 * 265.32554 * 7 6 5 29 29 H 1.09003 * 110.62315 * 142.68198 * 7 6 5 30 30 H 0.96998 * 120.00290 * 0.02562 * 12 10 8 31 31 H 0.96998 * 120.00210 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5774 2.0094 -0.8081 5 8 1.7754 2.0736 1.2758 6 6 2.6947 3.1850 1.3493 7 6 4.0189 2.6406 0.7691 8 6 3.5785 1.4690 -0.1367 9 1 3.8669 1.6565 -1.1710 10 6 4.1742 0.1729 0.3496 11 8 4.3239 -0.0176 1.5380 12 7 4.5405 -0.7746 -0.5362 13 6 5.0829 -1.9534 -0.0939 14 1 5.2163 -2.1231 0.9643 15 6 5.4553 -2.9326 -1.0068 16 7 5.9702 -4.0648 -0.5826 17 14 5.2241 -2.6396 -2.8372 18 1 6.4456 -2.0059 -3.3952 19 1 4.9832 -3.9363 -3.5196 20 1 4.0594 -1.7435 -3.0517 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.8333 3.4951 2.3850 27 1 2.3313 4.0184 0.7482 28 1 4.6675 2.2826 1.5685 29 1 4.5251 3.4075 0.1826 30 1 4.4210 -0.6221 -1.4867 31 1 6.2305 -4.7482 -1.2199 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234134221.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = -115.645664 kcal Electronic energy + Delta-G solvation = -14858.933097 eV Core-core repulsion = 12332.053642 eV Total energy + Delta-G solvation = -2526.879455 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.37593 -39.14024 -36.04196 -34.60123 -33.74967 -33.00112 -29.42827 -27.04965 -24.81277 -22.94661 -22.36773 -21.10686 -19.82929 -18.10853 -17.21045 -16.93018 -16.49851 -16.20846 -15.46342 -15.21751 -14.59651 -14.51508 -14.29555 -14.09130 -13.55816 -12.98454 -12.77005 -12.57839 -12.43313 -12.34076 -12.02345 -11.85521 -11.76643 -11.64393 -11.49545 -10.72079 -10.33425 -10.26144 -8.42860 -6.03878 1.28052 1.33650 1.42868 1.89493 2.21438 2.84946 2.95841 3.14107 3.57604 3.77859 4.05771 4.15425 4.17461 4.34242 4.42193 4.47778 4.51750 4.76415 4.83678 4.89230 4.97594 5.08983 5.20586 5.25789 5.39446 5.53232 5.91898 5.98263 6.56556 6.86016 7.37269 7.94617 8.74967 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036494 B = 0.009916 C = 0.009096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.074231 B = 2822.965344 C = 3077.418446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.096 3.904 4 H 0.119 0.881 5 O -0.395 6.395 6 C 0.048 3.952 7 C -0.139 4.139 8 C -0.138 4.138 9 H 0.130 0.870 10 C 0.465 3.535 11 O -0.623 6.623 12 N -0.587 5.587 13 C -0.327 4.327 14 H 0.052 0.948 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.961 3.039 18 H -0.256 1.256 19 H -0.274 1.274 20 H -0.229 1.229 21 H 0.080 0.920 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.116 0.884 30 H 0.389 0.611 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.588 14.645 -7.770 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.039 3.961 4 H 0.136 0.864 5 O -0.314 6.314 6 C -0.028 4.028 7 C -0.177 4.177 8 C -0.159 4.159 9 H 0.148 0.852 10 C 0.254 3.746 11 O -0.509 6.509 12 N -0.227 5.227 13 C -0.457 4.457 14 H 0.070 0.930 15 C -0.213 4.213 16 N -0.575 5.575 17 Si 0.781 3.219 18 H -0.180 1.180 19 H -0.199 1.199 20 H -0.152 1.152 21 H 0.099 0.901 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.134 0.866 30 H 0.225 0.775 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.556 14.238 -6.850 17.968 hybrid contribution 0.634 -0.777 -0.478 1.111 sum -7.923 13.461 -7.328 17.253 Atomic orbital electron populations 1.21653 0.93147 1.01949 1.02725 1.21686 0.98411 0.95121 1.01562 1.23135 0.91104 0.94339 0.87553 0.86381 1.89173 1.59141 1.45135 1.37989 1.23549 0.87159 0.89504 1.02634 1.22931 0.99338 0.96387 0.99078 1.22825 0.97576 0.92519 1.03010 0.85184 1.20576 0.81566 0.86524 0.85962 1.90536 1.60021 1.81494 1.18830 1.42102 1.57172 1.15180 1.08242 1.18979 1.39037 0.93241 0.94403 0.93028 1.26121 0.95831 0.94161 1.05164 1.69807 1.42508 1.07476 1.37682 0.85416 0.80704 0.79548 0.76230 1.17997 1.19926 1.15190 0.90104 0.92761 0.92908 0.90553 0.95180 0.89142 0.88630 0.92907 0.86596 0.77542 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.86 71.98 0.71 -2.94 16 2 C -0.13 -4.40 4.60 30.59 0.14 -4.26 16 3 C 0.10 2.82 3.17 31.10 0.10 2.92 16 4 H 0.12 2.41 8.14 -2.38 -0.02 2.39 16 5 O -0.39 -12.94 11.18 -148.98 -1.67 -14.61 16 6 C 0.05 1.19 7.63 72.49 0.55 1.74 16 7 C -0.14 -3.90 6.59 31.61 0.21 -3.69 16 8 C -0.14 -4.35 3.42 -10.53 -0.04 -4.39 16 9 H 0.13 3.02 8.11 -2.39 -0.02 3.00 16 10 C 0.47 21.62 4.73 87.66 0.41 22.04 16 11 O -0.62 -36.13 15.32 -3.05 -0.05 -36.18 16 12 N -0.59 -28.02 4.88 -306.98 -1.50 -29.52 16 13 C -0.33 -19.41 10.16 84.04 0.85 -18.56 16 14 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 15 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 16 N -0.93 -56.77 13.96 21.67 0.30 -56.46 16 17 Si 0.96 38.62 27.74 68.60 1.90 40.52 16 18 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.23 -7.64 6.51 99.48 0.65 -6.99 16 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.05 1.45 8.03 -2.39 -0.02 1.43 16 24 H 0.08 2.52 7.86 -2.39 -0.02 2.50 16 25 H 0.03 1.33 7.16 -2.39 -0.02 1.31 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.05 1.90 7.05 -2.39 -0.02 1.88 16 29 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.39 15.32 5.74 -92.71 -0.53 14.79 16 31 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -78.25 257.96 2.93 -75.32 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.53 Total: 28.40 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 3.41 Total: -7.47 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -1.20 Total: -85.99 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -1.71 Total: -50.79 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -78.25 2.93 -75.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234134221.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.326 kcal (2) G-P(sol) polarization free energy of solvation -78.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds