Wall clock time and date at job start Mon Mar 30 2020 02:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.83705 * 2 1 4 4 C 1.54850 * 110.94442 * 236.23294 * 2 1 3 5 5 O 1.44274 * 101.19913 * 265.09500 * 4 2 1 6 6 C 1.34597 * 107.66265 * 335.35933 * 5 4 2 7 7 C 1.50699 * 122.93580 * 197.19342 * 6 5 4 8 8 H 1.08997 * 109.47582 * 325.00182 * 7 6 5 9 9 C 1.50705 * 109.47132 * 205.00331 * 7 6 5 10 10 H 1.07998 * 119.99776 * 269.76618 * 9 7 6 11 11 C 1.37873 * 120.00149 * 89.77152 * 9 7 6 12 12 N 1.31518 * 119.99701 * 6.62522 * 11 9 7 13 13 Si 1.86793 * 120.00063 * 186.63501 * 11 9 7 14 14 H 1.48502 * 109.47527 * 89.99342 * 13 11 9 15 15 H 1.48504 * 109.47365 * 209.99534 * 13 11 9 16 16 H 1.48505 * 109.47134 * 329.99402 * 13 11 9 17 17 C 1.53000 * 109.47189 * 85.00326 * 7 6 5 18 18 O 1.42904 * 109.47192 * 185.31044 * 17 7 6 19 19 N 1.28632 * 114.12500 * 17.19833 * 6 5 4 20 20 H 1.08992 * 109.47101 * 297.72798 * 1 2 3 21 21 H 1.09000 * 109.46782 * 177.72383 * 1 2 3 22 22 H 1.09000 * 109.47034 * 57.72835 * 1 2 3 23 23 H 1.08998 * 109.47079 * 59.29848 * 3 2 1 24 24 H 1.09001 * 109.46981 * 179.29645 * 3 2 1 25 25 H 1.09004 * 109.46952 * 299.29757 * 3 2 1 26 26 H 1.08999 * 111.07772 * 23.07530 * 4 2 1 27 27 H 1.09001 * 111.07995 * 147.11112 * 4 2 1 28 28 H 0.97005 * 119.99480 * 179.97438 * 12 11 9 29 29 H 1.08996 * 109.47167 * 305.30648 * 17 7 6 30 30 H 1.09000 * 109.47605 * 65.30645 * 17 7 6 31 31 H 0.96706 * 113.99820 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0743 1.4300 0.0000 4 6 2.0835 -0.8038 -1.2022 5 8 2.2967 -2.0974 -0.6001 6 6 2.4639 -1.9098 0.7222 7 6 3.0737 -2.9496 1.6267 8 1 2.7821 -3.9432 1.2865 9 6 2.5852 -2.7379 3.0365 10 1 3.1362 -2.0965 3.7083 11 6 1.4349 -3.3631 3.4687 12 7 0.8359 -4.2441 2.6975 13 14 0.7271 -2.9588 5.1494 14 1 -0.2297 -1.8299 5.0251 15 1 0.0212 -4.1489 5.6887 16 1 1.8271 -2.5761 6.0707 17 6 4.5983 -2.8255 1.5912 18 8 5.1804 -3.8875 2.3499 19 7 2.0576 -0.7655 1.1464 20 1 -0.3633 0.4781 0.9096 21 1 -0.3633 -1.0269 -0.0408 22 1 -0.3633 0.5487 -0.8689 23 1 1.7131 1.9561 0.8836 24 1 3.1639 1.4040 0.0126 25 1 1.7335 1.9484 -0.8963 26 1 1.3498 -0.8618 -2.0062 27 1 3.0213 -0.3785 -1.5598 28 1 0.0267 -4.6843 3.0018 29 1 4.9437 -2.8847 0.5591 30 1 4.8950 -1.8681 2.0193 31 1 6.1471 -3.8719 2.3708 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238232810.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:32 Heat of formation + Delta-G solvation = -96.557971 kcal Electronic energy + Delta-G solvation = -14851.037558 eV Core-core repulsion = 12324.985808 eV Total energy + Delta-G solvation = -2526.051750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.11577 -37.96186 -35.85516 -35.40859 -33.25894 -30.99561 -28.32898 -27.55585 -26.75561 -23.91860 -21.19225 -20.97595 -18.49968 -18.25709 -17.22583 -16.78952 -16.47485 -16.10426 -15.41485 -14.82070 -14.80064 -14.26764 -13.87494 -13.71560 -13.40061 -13.07112 -12.87336 -12.60579 -12.47730 -12.39357 -12.30912 -11.91799 -11.54790 -11.25522 -10.73898 -10.71425 -10.55606 -9.81934 -8.17905 -6.22528 1.38733 1.41698 1.49028 1.51417 2.39236 2.54510 3.16464 3.36266 3.73539 3.89543 4.01945 4.09244 4.41645 4.42555 4.47453 4.49885 4.67097 4.76809 4.79938 4.87148 4.93611 5.11896 5.21063 5.36795 5.47782 5.67361 5.78097 6.10694 6.83153 7.18237 7.23699 7.42948 8.93219 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.024673 B = 0.013021 C = 0.010074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.555107 B = 2149.894078 C = 2778.786413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.021 3.979 3 C -0.113 4.113 4 C 0.019 3.981 5 O -0.376 6.376 6 C 0.321 3.679 7 C 0.088 3.912 8 H 0.048 0.952 9 C -0.479 4.479 10 H 0.054 0.946 11 C 0.015 3.985 12 N -0.925 5.925 13 Si 0.956 3.044 14 H -0.281 1.281 15 H -0.282 1.282 16 H -0.263 1.263 17 C 0.110 3.890 18 O -0.575 6.575 19 N -0.548 5.548 20 H 0.054 0.946 21 H 0.025 0.975 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.262 0.738 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 8.737 -7.178 11.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.070 4.070 3 C -0.170 4.170 4 C -0.057 4.057 5 O -0.281 6.281 6 C 0.095 3.905 7 C 0.068 3.932 8 H 0.066 0.934 9 C -0.517 4.517 10 H 0.072 0.928 11 C -0.183 4.183 12 N -0.565 5.565 13 Si 0.782 3.218 14 H -0.207 1.207 15 H -0.208 1.208 16 H -0.187 1.187 17 C 0.031 3.969 18 O -0.382 6.382 19 N -0.284 5.284 20 H 0.073 0.927 21 H 0.044 0.956 22 H 0.117 0.883 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.140 0.860 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.909 8.840 -6.519 11.363 hybrid contribution -0.243 -0.150 -0.006 0.285 sum 2.667 8.690 -6.525 11.190 Atomic orbital electron populations 1.21764 0.92816 1.00788 1.03118 1.23363 0.96950 0.97935 0.88703 1.21564 1.00534 0.91761 1.03157 1.24871 1.02831 0.80969 0.97078 1.86968 1.86354 1.33481 1.21283 1.26752 0.88841 0.93873 0.81002 1.17609 0.91324 0.91824 0.92446 0.93389 1.20785 1.08553 1.26997 0.95323 0.92750 1.25723 0.97291 0.94189 1.01128 1.70064 1.19923 1.27190 1.39298 0.85575 0.78658 0.77434 0.80121 1.20732 1.20754 1.18734 1.21837 0.92540 0.89255 0.93257 1.86596 1.25401 1.51077 1.75078 1.74939 1.19286 1.06686 1.27485 0.92719 0.95572 0.88346 0.92369 0.92726 0.88902 0.85963 0.88471 0.92955 0.93665 0.93938 0.76360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.93 71.98 0.64 -3.59 16 2 C 0.02 0.75 1.36 4.03 0.01 0.76 16 3 C -0.11 -3.01 8.93 71.98 0.64 -2.37 16 4 C 0.02 0.60 7.29 72.61 0.53 1.13 16 5 O -0.38 -16.66 11.17 -78.62 -0.88 -17.54 16 6 C 0.32 15.72 6.80 88.58 0.60 16.32 16 7 C 0.09 4.65 2.57 -12.28 -0.03 4.61 16 8 H 0.05 2.89 7.37 -2.39 -0.02 2.88 16 9 C -0.48 -27.53 7.54 25.60 0.19 -27.34 16 10 H 0.05 3.13 7.82 -2.91 -0.02 3.11 16 11 C 0.02 0.90 5.45 84.65 0.46 1.36 16 12 N -0.93 -56.92 12.84 21.45 0.28 -56.64 16 13 Si 0.96 46.62 29.54 68.60 2.03 48.65 16 14 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 15 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 17 C 0.11 4.67 6.39 71.98 0.46 5.13 16 18 O -0.58 -23.68 13.42 -148.98 -2.00 -25.68 16 19 N -0.55 -25.68 10.36 -410.04 -4.25 -29.93 16 20 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.12 3.19 7.91 -2.39 -0.02 3.17 16 27 H 0.10 2.59 7.92 -2.39 -0.02 2.57 16 28 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.39 10.50 9.12 -74.05 -0.68 9.83 16 Total: -1.00 -71.98 267.50 -0.88 -72.85 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.44 Total: 12.29 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 3.51 Total: -3.99 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -3.97 Total: -86.57 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -2.88 Total: -43.22 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -71.98 -0.88 -72.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238232810.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.705 kcal (2) G-P(sol) polarization free energy of solvation -71.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds