Wall clock time and date at job start Mon Mar 30 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.86120 * 2 1 4 4 C 1.54850 * 110.94435 * 123.74184 * 2 1 3 5 5 O 1.44271 * 101.23023 * 94.93087 * 4 2 1 6 6 C 1.34601 * 107.67064 * 24.62167 * 5 4 2 7 7 C 1.50699 * 122.94141 * 162.80389 * 6 5 4 8 8 H 1.09001 * 109.46747 * 35.02161 * 7 6 5 9 9 C 1.50697 * 109.46960 * 155.02140 * 7 6 5 10 10 H 1.07995 * 120.00286 * 0.02562 * 9 7 6 11 11 C 1.37880 * 119.99357 * 179.97438 * 9 7 6 12 12 N 1.31510 * 120.00769 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99644 * 180.02562 * 11 9 7 14 14 H 1.48510 * 109.46790 * 60.00161 * 13 11 9 15 15 H 1.48494 * 109.47076 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47156 * 300.00658 * 13 11 9 17 17 C 1.53007 * 109.47033 * 275.02592 * 7 6 5 18 18 O 1.42891 * 109.47180 * 64.99758 * 17 7 6 19 19 N 1.28640 * 114.11921 * 342.80048 * 6 5 4 20 20 H 1.08987 * 109.47559 * 296.25329 * 1 2 3 21 21 H 1.09000 * 109.46831 * 56.26315 * 1 2 3 22 22 H 1.09004 * 109.46777 * 176.25034 * 1 2 3 23 23 H 1.08999 * 109.47078 * 183.74538 * 3 2 1 24 24 H 1.09004 * 109.46767 * 303.74189 * 3 2 1 25 25 H 1.08998 * 109.47267 * 63.74119 * 3 2 1 26 26 H 1.09002 * 111.07907 * 336.93056 * 4 2 1 27 27 H 1.08997 * 111.07715 * 212.93216 * 4 2 1 28 28 H 0.96999 * 120.00661 * 179.97438 * 12 11 9 29 29 H 1.08997 * 109.46792 * 184.99793 * 17 7 6 30 30 H 1.09003 * 109.46322 * 304.99805 * 17 7 6 31 31 H 0.96703 * 114.00253 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0749 1.4297 0.0000 4 6 2.0836 -0.8033 1.2026 5 8 2.2976 -2.0972 0.6015 6 6 2.4648 -1.9108 -0.7210 7 6 3.0754 -2.9510 -1.6244 8 1 2.7839 -3.9445 -1.2835 9 6 2.5872 -2.7405 -3.0345 10 1 1.9036 -1.9339 -3.2546 11 6 3.0143 -3.5771 -4.0439 12 7 3.8471 -4.5590 -3.7761 13 14 2.4098 -3.3157 -5.7920 14 1 2.8069 -1.9620 -6.2559 15 1 3.0113 -4.3408 -6.6822 16 1 0.9302 -3.4368 -5.8274 17 6 4.5999 -2.8263 -1.5884 18 8 5.0726 -3.1402 -0.2770 19 7 2.0578 -0.7670 -1.1462 20 1 -0.3634 0.4545 0.9215 21 1 -0.3633 0.5708 -0.8546 22 1 -0.3633 -1.0255 -0.0672 23 1 3.1625 1.4041 -0.0671 24 1 1.6708 1.9725 -0.8546 25 1 1.7794 1.9312 0.9216 26 1 1.3498 -0.8610 2.0065 27 1 3.0209 -0.3774 1.5604 28 1 4.1473 -5.1478 -4.4861 29 1 5.0381 -3.5181 -2.3078 30 1 4.8871 -1.8062 -1.8437 31 1 6.0330 -3.0812 -0.1804 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238232858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:34 Heat of formation + Delta-G solvation = -69.531803 kcal Electronic energy + Delta-G solvation = -14823.280442 eV Core-core repulsion = 12298.400634 eV Total energy + Delta-G solvation = -2524.879807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58097 -36.13008 -34.39287 -33.56998 -31.54303 -29.01893 -27.12317 -26.17696 -24.59440 -22.29838 -19.78925 -19.09673 -16.67073 -15.84409 -15.57200 -15.53610 -14.78228 -14.40618 -13.67716 -13.50613 -12.94887 -12.58638 -12.36159 -12.19719 -12.07929 -11.27257 -11.13993 -11.11010 -10.87060 -10.71173 -10.59357 -10.05936 -9.91007 -9.52001 -9.05278 -8.95311 -8.37569 -8.25067 -6.12359 -4.17297 3.12824 3.32751 3.35583 3.40222 4.10284 4.43341 4.70058 5.09931 5.16111 5.24836 5.31583 5.60289 5.63231 5.73215 5.81248 6.02127 6.05532 6.14682 6.32618 6.47001 6.52632 6.73596 6.80375 7.24151 7.41587 7.53048 7.91686 8.10896 8.61328 8.84194 8.94091 9.47298 10.94775 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.010909 C = 0.008885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.776717 B = 2566.058136 C = 3150.618034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.034 3.966 3 C -0.121 4.121 4 C 0.022 3.978 5 O -0.344 6.344 6 C 0.340 3.660 7 C 0.119 3.881 8 H 0.059 0.941 9 C -0.501 4.501 10 H 0.081 0.919 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.907 3.093 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.079 3.921 18 O -0.586 6.586 19 N -0.538 5.538 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.265 0.735 29 H 0.094 0.906 30 H 0.021 0.979 31 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 6.959 6.617 9.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.057 4.057 3 C -0.179 4.179 4 C -0.055 4.055 5 O -0.247 6.247 6 C 0.116 3.884 7 C 0.100 3.900 8 H 0.077 0.923 9 C -0.539 4.539 10 H 0.099 0.901 11 C -0.143 4.143 12 N -0.533 5.533 13 Si 0.734 3.266 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.201 1.201 17 C 0.001 3.999 18 O -0.390 6.390 19 N -0.274 5.274 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.111 0.889 30 H 0.040 0.960 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.888 7.089 6.050 9.509 hybrid contribution 0.294 0.129 -0.202 0.379 sum -1.595 7.218 5.848 9.425 Atomic orbital electron populations 1.21785 0.93325 1.02319 1.01491 1.23048 0.96218 0.96558 0.89886 1.21584 1.00982 0.93956 1.01362 1.24523 1.00838 0.83078 0.97077 1.87025 1.85737 1.30426 1.21543 1.26664 0.86577 0.94070 0.81108 1.17748 0.89758 0.90973 0.91542 0.92279 1.21022 1.27934 1.15044 0.89893 0.90113 1.25022 0.94950 0.94678 0.99629 1.69858 1.32753 1.17337 1.33318 0.86403 0.79143 0.77876 0.83158 1.20009 1.21299 1.20065 1.22641 0.95961 0.98432 0.82885 1.86539 1.25041 1.93275 1.34114 1.75040 1.20895 1.06172 1.25274 0.92564 0.91751 0.92488 0.92577 0.91778 0.92695 0.88657 0.90942 0.92511 0.88864 0.96027 0.79892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.93 37.16 0.33 -1.73 16 2 C 0.03 0.61 1.36 -130.20 -0.18 0.44 16 3 C -0.12 -1.80 8.93 37.16 0.33 -1.47 16 4 C 0.02 0.39 7.29 38.13 0.28 0.66 16 5 O -0.34 -7.70 11.17 -15.58 -0.17 -7.87 16 6 C 0.34 8.20 6.57 -13.62 -0.09 8.12 16 7 C 0.12 3.14 2.48 -92.92 -0.23 2.91 16 8 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 9 C -0.50 -13.81 8.37 -34.44 -0.29 -14.10 16 10 H 0.08 2.28 7.05 -52.49 -0.37 1.91 16 11 C 0.06 1.59 5.29 -17.82 -0.09 1.49 16 12 N -0.89 -24.76 11.29 55.43 0.63 -24.13 16 13 Si 0.91 21.21 29.54 -169.99 -5.02 16.18 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 17 C 0.08 1.92 6.25 37.16 0.23 2.16 16 18 O -0.59 -12.89 13.41 -35.23 -0.47 -13.36 16 19 N -0.54 -12.32 9.91 -44.49 -0.44 -12.76 16 20 H 0.06 0.70 8.14 -51.94 -0.42 0.28 16 21 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.10 1.36 7.92 -51.93 -0.41 0.95 16 27 H 0.07 1.17 7.92 -51.93 -0.41 0.76 16 28 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.36 5.89 9.12 45.56 0.42 6.31 16 LS Contribution 263.51 15.07 3.97 3.97 Total: -1.00 -30.26 263.51 -4.82 -35.08 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.60 Total: 4.42 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 0.29 Total: -1.54 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.19 Total: -36.89 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.65 Total: -21.23 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.26 -4.82 -35.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238232858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.449 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds