Wall clock time and date at job start Mon Mar 30 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48504 * 109.47137 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.46841 * 29.99622 * 3 2 1 6 6 H 1.48489 * 109.47327 * 149.99969 * 3 2 1 7 7 C 1.37879 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99704 * 180.02562 * 7 2 1 10 10 H 1.08998 * 110.89162 * 303.83325 * 9 7 2 11 11 C 1.54909 * 110.97551 * 180.02562 * 9 7 2 12 12 O 1.44201 * 103.07547 * 206.33268 * 11 9 7 13 13 C 1.43363 * 107.28801 * 21.43221 * 12 11 9 14 14 H 1.08998 * 109.63289 * 240.94032 * 13 12 11 15 15 C 1.53000 * 109.63001 * 120.55068 * 13 12 11 16 16 H 1.08998 * 110.64377 * 298.30130 * 15 13 12 17 17 C 1.54594 * 110.72505 * 61.45388 * 15 13 12 18 18 C 1.53991 * 105.14285 * 140.31365 * 17 15 13 19 19 N 1.47905 * 107.22505 * 1.12969 * 18 17 15 20 20 C 1.48813 * 105.67450 * 334.90354 * 19 18 17 21 21 O 1.43758 * 108.79416 * 0.67554 * 13 12 11 22 22 H 0.97002 * 119.99504 * 0.02562 * 1 2 3 23 23 H 1.08999 * 110.70096 * 87.93326 * 11 9 7 24 24 H 1.09005 * 110.69717 * 324.72053 * 11 9 7 25 25 H 1.09005 * 110.30718 * 21.40171 * 17 15 13 26 26 H 1.09001 * 110.39460 * 259.27551 * 17 15 13 27 27 H 1.09002 * 109.91707 * 120.58029 * 18 17 15 28 28 H 1.09002 * 109.91668 * 241.67819 * 18 17 15 29 29 H 1.00892 * 110.99818 * 95.27851 * 19 18 17 30 30 H 1.08998 * 110.51915 * 280.54171 * 20 19 18 31 31 H 1.09009 * 110.83927 * 157.56590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1942 0.0011 10 1 3.9006 -0.6274 -0.8447 11 6 4.0660 -2.6406 0.0010 12 8 5.3580 -2.4947 0.6246 13 6 5.3293 -1.2798 1.3851 14 1 6.0870 -0.5933 1.0074 15 6 5.6043 -1.5888 2.8581 16 1 4.8346 -2.2457 3.2632 17 6 7.0064 -2.2162 3.0330 18 6 7.5719 -1.5853 4.3189 19 7 6.5349 -0.6761 4.8533 20 6 5.7045 -0.2813 3.6832 21 8 4.0294 -0.6806 1.2519 22 1 -0.4849 0.8401 -0.0004 23 1 4.1700 -3.0133 -1.0180 24 1 3.4265 -3.2984 0.5896 25 1 7.6399 -1.9702 2.1807 26 1 6.9274 -3.2975 3.1452 27 1 7.7942 -2.3644 5.0481 28 1 8.4768 -1.0225 4.0895 29 1 5.9749 -1.1384 5.5537 30 1 6.2019 0.4995 3.1078 31 1 4.7160 0.0487 4.0029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258590185.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:50 Heat of formation + Delta-G solvation = -89.389374 kcal Electronic energy + Delta-G solvation = -14850.407966 eV Core-core repulsion = 12324.667070 eV Total energy + Delta-G solvation = -2525.740896 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.69631 -37.88455 -34.18863 -32.74728 -31.05497 -29.18752 -28.43272 -25.09103 -23.31779 -21.57470 -21.07715 -19.72196 -17.27102 -16.76698 -16.32546 -15.70847 -14.79074 -14.41795 -14.12287 -13.62164 -13.33118 -13.15904 -12.67050 -12.28062 -12.17139 -11.68742 -11.51781 -11.16910 -10.95293 -10.89494 -10.49099 -10.26779 -9.87841 -9.73740 -9.15466 -8.77683 -8.74846 -8.50492 -6.27041 -4.38639 3.26840 3.34321 3.53557 4.20307 4.32254 4.37178 4.67939 4.93844 5.00227 5.20260 5.29265 5.45407 5.61643 5.70268 5.78899 5.84298 5.93905 5.99676 6.06429 6.11398 6.19866 6.25240 6.43216 6.63619 6.76268 6.95114 7.37414 7.44402 8.03920 8.23600 8.72152 9.33962 10.82858 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039634 B = 0.009870 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.295673 B = 2836.171156 C = 3239.319817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.087 3.913 3 Si 0.873 3.127 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.525 4.525 8 H 0.083 0.917 9 C 0.146 3.854 10 H 0.041 0.959 11 C 0.036 3.964 12 O -0.403 6.403 13 C 0.236 3.764 14 H 0.064 0.936 15 C -0.132 4.132 16 H 0.082 0.918 17 C -0.138 4.138 18 C 0.040 3.960 19 N -0.676 5.676 20 C 0.054 3.946 21 O -0.378 6.378 22 H 0.269 0.731 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.335 0.665 30 H 0.079 0.921 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.013 -2.226 5.088 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.118 4.118 3 Si 0.699 3.301 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.561 4.561 8 H 0.101 0.899 9 C 0.091 3.909 10 H 0.059 0.941 11 C -0.040 4.040 12 O -0.324 6.324 13 C 0.140 3.860 14 H 0.081 0.919 15 C -0.152 4.152 16 H 0.101 0.899 17 C -0.177 4.177 18 C -0.090 4.090 19 N -0.302 5.302 20 C -0.075 4.075 21 O -0.300 6.300 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.098 0.902 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.350 -1.490 5.290 13.517 hybrid contribution -0.333 -0.041 -0.372 0.501 sum 12.016 -1.531 4.918 13.074 Atomic orbital electron populations 1.69903 1.06602 1.27791 1.47619 1.25042 0.94761 0.99798 0.92249 0.86885 0.82328 0.82359 0.78527 1.20615 1.21200 1.15836 1.20747 0.86598 0.95300 1.53480 0.89867 1.21908 0.96543 0.88831 0.83641 0.94124 1.24136 0.82773 0.99679 0.97448 1.88722 1.34578 1.42754 1.66351 1.23692 0.89291 0.83189 0.89854 0.91883 1.23086 0.97441 0.98466 0.96238 0.89908 1.22681 0.95959 1.00420 0.98622 1.22759 0.96300 0.94628 0.95278 1.62925 1.15038 1.40454 1.11831 1.23073 0.97684 0.96183 0.90599 1.89577 1.28485 1.67963 1.43977 0.92147 0.89740 0.91326 0.91064 0.91344 0.91895 0.90838 0.85000 0.90216 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.37 13.96 55.43 0.77 -25.59 16 2 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 3 Si 0.87 21.40 27.08 -169.99 -4.60 16.80 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.24 -5.65 5.72 56.52 0.32 -5.33 16 7 C -0.52 -14.57 9.41 -34.44 -0.32 -14.89 16 8 H 0.08 2.45 8.00 -52.49 -0.42 2.03 16 9 C 0.15 3.47 2.66 -26.87 -0.07 3.40 16 10 H 0.04 0.96 7.42 -51.93 -0.39 0.58 16 11 C 0.04 0.74 7.51 38.16 0.29 1.02 16 12 O -0.40 -8.01 10.95 -59.04 -0.65 -8.66 16 13 C 0.24 4.59 3.33 37.16 0.12 4.72 16 14 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 15 C -0.13 -2.17 3.09 -88.76 -0.27 -2.44 16 16 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 17 C -0.14 -1.87 6.26 -25.38 -0.16 -2.03 16 18 C 0.04 0.48 7.50 -2.75 -0.02 0.46 16 19 N -0.68 -8.99 7.54 -109.86 -0.83 -9.82 16 20 C 0.05 0.83 6.84 -1.74 -0.01 0.82 16 21 O -0.38 -8.85 8.63 -59.04 -0.51 -9.36 16 22 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 24 H 0.07 1.43 8.01 -51.93 -0.42 1.02 16 25 H 0.07 0.97 7.85 -51.93 -0.41 0.57 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.34 3.98 8.92 -39.30 -0.35 3.63 16 30 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 31 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 LS Contribution 253.68 15.07 3.82 3.82 Total: -1.00 -29.73 253.68 -7.11 -36.84 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -4.57 Total: 2.52 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.55 Total: -6.55 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.05 Total: -35.41 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -1.16 Total: -18.02 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.60 Total: 16.80 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.73 -7.11 -36.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258590185.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.552 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds