Wall clock time and date at job start Mon Mar 30 2020 02:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00330 * 2 1 4 4 H 1.48504 * 109.47137 * 270.00094 * 3 2 1 5 5 H 1.48498 * 109.46841 * 29.99622 * 3 2 1 6 6 H 1.48489 * 109.47327 * 149.99969 * 3 2 1 7 7 C 1.37879 * 119.99573 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00140 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99704 * 180.02562 * 7 2 1 10 10 H 1.08998 * 110.89162 * 303.83325 * 9 7 2 11 11 C 1.54909 * 110.97551 * 180.02562 * 9 7 2 12 12 O 1.44201 * 103.07547 * 206.33268 * 11 9 7 13 13 C 1.43363 * 107.28801 * 21.43221 * 12 11 9 14 14 H 1.08998 * 109.63289 * 240.94032 * 13 12 11 15 15 C 1.53000 * 109.63001 * 120.55068 * 13 12 11 16 16 H 1.08998 * 110.64377 * 298.30130 * 15 13 12 17 17 C 1.54594 * 110.72505 * 61.45388 * 15 13 12 18 18 C 1.53991 * 105.14285 * 140.31365 * 17 15 13 19 19 N 1.47905 * 107.22505 * 1.12969 * 18 17 15 20 20 C 1.48813 * 105.67450 * 334.90354 * 19 18 17 21 21 O 1.43758 * 108.79416 * 0.67554 * 13 12 11 22 22 H 0.97002 * 119.99504 * 0.02562 * 1 2 3 23 23 H 1.08999 * 110.70096 * 87.93326 * 11 9 7 24 24 H 1.09005 * 110.69717 * 324.72053 * 11 9 7 25 25 H 1.09005 * 110.30718 * 21.40171 * 17 15 13 26 26 H 1.09001 * 110.39460 * 259.27551 * 17 15 13 27 27 H 1.09002 * 109.91707 * 120.58029 * 18 17 15 28 28 H 1.09002 * 109.91668 * 241.67819 * 18 17 15 29 29 H 1.00892 * 110.99818 * 95.27851 * 19 18 17 30 30 H 1.08998 * 110.51915 * 280.54171 * 20 19 18 31 31 H 1.09009 * 110.83927 * 157.56590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1942 0.0011 10 1 3.9006 -0.6274 -0.8447 11 6 4.0660 -2.6406 0.0010 12 8 5.3580 -2.4947 0.6246 13 6 5.3293 -1.2798 1.3851 14 1 6.0870 -0.5933 1.0074 15 6 5.6043 -1.5888 2.8581 16 1 4.8346 -2.2457 3.2632 17 6 7.0064 -2.2162 3.0330 18 6 7.5719 -1.5853 4.3189 19 7 6.5349 -0.6761 4.8533 20 6 5.7045 -0.2813 3.6832 21 8 4.0294 -0.6806 1.2519 22 1 -0.4849 0.8401 -0.0004 23 1 4.1700 -3.0133 -1.0180 24 1 3.4265 -3.2984 0.5896 25 1 7.6399 -1.9702 2.1807 26 1 6.9274 -3.2975 3.1452 27 1 7.7942 -2.3644 5.0481 28 1 8.4768 -1.0225 4.0895 29 1 5.9749 -1.1384 5.5537 30 1 6.2019 0.4995 3.1078 31 1 4.7160 0.0487 4.0029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258590185.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:49 Heat of formation + Delta-G solvation = -111.847495 kcal Electronic energy + Delta-G solvation = -14851.381823 eV Core-core repulsion = 12324.667070 eV Total energy + Delta-G solvation = -2526.714754 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.28348 -39.11961 -35.94323 -34.79843 -32.56592 -30.58492 -29.78128 -26.98361 -24.78905 -23.01398 -22.57421 -21.03834 -19.30954 -18.22519 -17.75027 -17.28999 -16.50162 -15.97181 -15.78029 -14.89831 -14.76590 -14.66019 -14.59893 -13.88004 -13.56436 -13.28186 -12.94546 -12.84823 -12.34074 -12.24874 -12.05217 -11.83694 -11.62361 -11.55920 -10.89369 -10.84570 -10.41859 -9.65691 -8.44397 -6.60832 1.33040 1.36753 1.59823 2.33193 2.57634 2.91633 3.17379 3.45235 3.77162 3.83245 3.99186 4.04090 4.19757 4.30883 4.39577 4.44701 4.50624 4.56359 4.77287 4.90926 4.94487 5.03800 5.07396 5.16148 5.27724 5.46781 5.68928 6.05684 6.32315 6.39176 6.52657 7.15556 8.69098 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039634 B = 0.009870 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.295673 B = 2836.171156 C = 3239.319817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.034 3.966 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.227 1.227 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.143 3.857 10 H 0.050 0.950 11 C 0.043 3.957 12 O -0.399 6.399 13 C 0.229 3.771 14 H 0.079 0.921 15 C -0.132 4.132 16 H 0.067 0.933 17 C -0.130 4.130 18 C 0.044 3.956 19 N -0.676 5.676 20 C 0.058 3.942 21 O -0.399 6.399 22 H 0.272 0.728 23 H 0.111 0.889 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.343 0.657 30 H 0.078 0.922 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.414 -1.860 5.542 15.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.168 4.168 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.150 1.150 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.088 3.912 10 H 0.067 0.933 11 C -0.033 4.033 12 O -0.320 6.320 13 C 0.133 3.867 14 H 0.096 0.904 15 C -0.153 4.153 16 H 0.085 0.915 17 C -0.169 4.169 18 C -0.086 4.086 19 N -0.303 5.303 20 C -0.072 4.072 21 O -0.321 6.321 22 H 0.081 0.919 23 H 0.128 0.872 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.096 0.904 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.769 -1.143 5.751 15.890 hybrid contribution -1.072 -0.244 -0.484 1.201 sum 13.697 -1.386 5.267 14.740 Atomic orbital electron populations 1.70019 1.08265 1.28856 1.49515 1.25905 0.95470 1.03456 0.91925 0.85900 0.81116 0.77891 0.79158 1.19235 1.21166 1.14992 1.20953 0.89014 0.94096 1.53056 0.93187 1.21782 0.94211 0.91117 0.84079 0.93274 1.24042 0.82803 0.97619 0.98843 1.88717 1.33842 1.43004 1.66450 1.24046 0.87771 0.83108 0.91748 0.90392 1.23071 0.98842 0.99145 0.94213 0.91463 1.22653 0.93941 1.00685 0.99664 1.22816 0.95849 0.94997 0.94912 1.62917 1.14983 1.41289 1.11116 1.22967 0.97424 0.95601 0.91204 1.89491 1.30575 1.68575 1.43415 0.91874 0.87151 0.92245 0.90859 0.90761 0.89607 0.89935 0.84088 0.90372 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.96 21.45 0.30 -56.37 16 2 C 0.03 1.94 5.47 84.65 0.46 2.41 16 3 Si 0.94 44.03 27.08 68.60 1.86 45.89 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.23 -10.30 5.72 99.48 0.57 -9.73 16 7 C -0.53 -30.14 9.41 25.60 0.24 -29.90 16 8 H 0.05 3.06 8.00 -2.91 -0.02 3.04 16 9 C 0.14 6.72 2.66 30.50 0.08 6.80 16 10 H 0.05 2.23 7.42 -2.39 -0.02 2.22 16 11 C 0.04 1.72 7.51 72.63 0.55 2.27 16 12 O -0.40 -15.04 10.95 -126.22 -1.38 -16.42 16 13 C 0.23 8.47 3.33 71.98 0.24 8.71 16 14 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 15 C -0.13 -4.11 3.09 -9.59 -0.03 -4.14 16 16 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 17 C -0.13 -3.17 6.26 31.47 0.20 -2.97 16 18 C 0.04 0.89 7.50 86.44 0.65 1.54 16 19 N -0.68 -16.22 7.54 -501.50 -3.78 -20.00 16 20 C 0.06 1.68 6.84 86.59 0.59 2.28 16 21 O -0.40 -18.19 8.63 -126.22 -1.09 -19.28 16 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 24 H 0.06 2.47 8.01 -2.38 -0.02 2.45 16 25 H 0.07 1.77 7.85 -2.38 -0.02 1.75 16 26 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.34 7.33 8.92 -89.70 -0.80 6.53 16 30 H 0.08 2.30 8.04 -2.39 -0.02 2.28 16 31 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -63.28 253.68 -0.94 -64.22 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.18 Total: 14.97 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 2.98 Total: -13.01 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -3.48 Total: -76.37 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -2.47 Total: -35.70 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.86 Total: 45.89 kcal Total: -63.28 -0.94 -64.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258590185.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.628 kcal (2) G-P(sol) polarization free energy of solvation -63.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds