Wall clock time and date at job start Mon Mar 30 2020 02:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00315 * 2 1 4 4 H 1.48507 * 109.47042 * 270.00096 * 3 2 1 5 5 H 1.48504 * 109.47030 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47364 * 149.99853 * 3 2 1 7 7 C 1.37886 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99133 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00121 * 359.97438 * 7 2 1 10 10 H 1.08992 * 110.89378 * 303.83469 * 9 7 2 11 11 C 1.54913 * 110.97578 * 179.97438 * 9 7 2 12 12 O 1.44192 * 103.07554 * 206.33444 * 11 9 7 13 13 C 1.43369 * 107.29099 * 21.43611 * 12 11 9 14 14 H 1.08998 * 109.63077 * 240.93935 * 13 12 11 15 15 C 1.52995 * 109.62883 * 120.55017 * 13 12 11 16 16 H 1.09003 * 110.59505 * 308.00282 * 15 13 12 17 17 C 1.55092 * 110.83274 * 71.03049 * 15 13 12 18 18 C 1.54598 * 102.84998 * 155.84640 * 17 15 13 19 19 C 1.54000 * 105.22213 * 338.15300 * 18 17 15 20 20 N 1.47897 * 107.05672 * 358.72428 * 19 18 17 21 21 O 1.43748 * 108.78933 * 0.67155 * 13 12 11 22 22 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.69570 * 87.93269 * 11 9 7 24 24 H 1.09006 * 110.69513 * 324.73177 * 11 9 7 25 25 H 1.09003 * 110.70966 * 37.53639 * 17 15 13 26 26 H 1.09003 * 110.81580 * 274.20731 * 17 15 13 27 27 H 1.09002 * 110.31193 * 219.18658 * 18 17 15 28 28 H 1.09000 * 110.30788 * 97.11602 * 18 17 15 29 29 H 1.09000 * 109.91521 * 118.07714 * 19 18 17 30 30 H 1.08997 * 109.91264 * 239.37252 * 19 18 17 31 31 H 1.00899 * 111.00037 * 264.81576 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.5659 -2.5517 0.8478 11 6 2.2263 -3.7028 0.0015 12 8 1.4532 -4.7490 -0.6205 13 6 0.4146 -4.1171 -1.3804 14 1 -0.5584 -4.4297 -1.0013 15 6 0.5431 -4.5108 -2.8532 16 1 1.5559 -4.3278 -3.2120 17 6 0.1499 -5.9963 -3.0633 18 6 -0.2664 -6.0345 -4.5517 19 6 -0.6225 -4.5796 -4.9095 20 7 -0.4471 -3.7754 -3.6807 21 8 0.5460 -2.6917 -1.2482 22 1 -0.4850 0.8401 -0.0004 23 1 2.4982 -3.9784 1.0204 24 1 3.1152 -3.4781 -0.5881 25 1 -0.6881 -6.2678 -2.4213 26 1 1.0023 -6.6517 -2.8843 27 1 -1.1343 -6.6803 -4.6854 28 1 0.5625 -6.3835 -5.1675 29 1 0.0451 -4.2152 -5.6903 30 1 -1.6577 -4.5228 -5.2459 31 1 -1.3221 -3.6703 -3.1894 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258875269.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:08 Heat of formation + Delta-G solvation = -91.300680 kcal Electronic energy + Delta-G solvation = -14765.749247 eV Core-core repulsion = 12239.925470 eV Total energy + Delta-G solvation = -2525.823777 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.40531 -37.69331 -33.88256 -32.58349 -30.28013 -29.62160 -28.07659 -24.87459 -23.25580 -21.29338 -20.77396 -20.08022 -16.95226 -16.36948 -15.89202 -15.10023 -14.93172 -14.50864 -13.88024 -13.65726 -13.27331 -12.99847 -12.29247 -12.09984 -11.80003 -11.34404 -11.22295 -11.12452 -10.96738 -10.90137 -10.52454 -10.42682 -10.10983 -9.32615 -8.94567 -8.68412 -8.29800 -8.19667 -6.12508 -4.26847 3.28683 3.35111 3.37079 4.17687 4.36296 4.77495 4.89004 4.93445 5.08122 5.28506 5.41239 5.55107 5.69103 5.77713 5.90504 6.07218 6.12431 6.12802 6.17039 6.19572 6.28468 6.43221 6.56889 6.87546 7.13384 7.35796 7.72590 7.77940 8.08911 8.42926 8.82014 9.45052 10.95881 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043218 B = 0.008599 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.722659 B = 3255.340031 C = 3642.846236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.079 3.921 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.181 3.819 10 H 0.042 0.958 11 C 0.024 3.976 12 O -0.405 6.405 13 C 0.227 3.773 14 H 0.057 0.943 15 C 0.069 3.931 16 H 0.091 0.909 17 C -0.146 4.146 18 C -0.152 4.152 19 C 0.041 3.959 20 N -0.652 5.652 21 O -0.347 6.347 22 H 0.264 0.736 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -9.046 -5.115 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.128 4.128 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.086 0.914 9 C 0.126 3.874 10 H 0.060 0.940 11 C -0.052 4.052 12 O -0.326 6.326 13 C 0.130 3.870 14 H 0.074 0.926 15 C -0.041 4.041 16 H 0.109 0.891 17 C -0.186 4.186 18 C -0.191 4.191 19 C -0.089 4.089 20 N -0.280 5.280 21 O -0.267 6.267 22 H 0.074 0.926 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.481 -8.456 -5.507 10.102 hybrid contribution -0.133 0.038 0.327 0.355 sum -0.614 -8.417 -5.180 9.902 Atomic orbital electron populations 1.70014 1.06171 1.27098 1.46407 1.25085 0.94862 0.99634 0.93196 0.86484 0.79797 0.82652 0.78413 1.20261 1.20993 1.19606 1.20833 0.92801 0.89185 1.54185 0.91400 1.21495 0.88399 0.93220 0.84242 0.93998 1.24351 0.95988 0.88012 0.96890 1.88678 1.44956 1.32623 1.66355 1.23779 0.90372 0.83494 0.89376 0.92561 1.23122 0.98149 0.89896 0.92965 0.89058 1.23091 1.01519 0.98346 0.95627 1.22823 1.01175 0.98384 0.96749 1.22777 1.00762 0.90651 0.94725 1.62638 1.13412 1.46074 1.05901 1.89663 1.78221 1.15675 1.43112 0.92590 0.90181 0.91868 0.91620 0.90700 0.91825 0.91512 0.90891 0.91937 0.84490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.41 13.21 55.43 0.73 -24.68 16 2 C 0.08 2.23 5.46 -17.82 -0.10 2.13 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.90 8.83 -34.44 -0.30 -15.20 16 8 H 0.07 1.82 7.76 -52.48 -0.41 1.41 16 9 C 0.18 4.75 3.25 -26.88 -0.09 4.66 16 10 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 11 C 0.02 0.52 7.51 38.17 0.29 0.81 16 12 O -0.41 -8.68 11.16 -59.04 -0.66 -9.34 16 13 C 0.23 4.86 3.53 37.16 0.13 4.99 16 14 H 0.06 1.17 8.03 -51.93 -0.42 0.75 16 15 C 0.07 1.27 3.29 -65.71 -0.22 1.05 16 16 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 17 C -0.15 -2.14 6.47 -24.79 -0.16 -2.30 16 18 C -0.15 -1.88 6.92 -25.37 -0.18 -2.06 16 19 C 0.04 0.56 7.52 -2.75 -0.02 0.54 16 20 N -0.65 -11.59 7.16 -103.09 -0.74 -12.33 16 21 O -0.35 -9.15 10.79 -59.04 -0.64 -9.78 16 22 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 24 H 0.06 1.37 8.01 -51.93 -0.42 0.96 16 25 H 0.07 0.93 7.97 -51.93 -0.41 0.52 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.34 5.91 8.62 -39.29 -0.34 5.57 16 LS Contribution 259.79 15.07 3.91 3.91 Total: -1.00 -30.34 259.79 -7.56 -37.90 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.51 Total: 3.44 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.64 Total: -5.37 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.01 Total: -37.01 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -1.30 Total: -19.12 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.34 -7.56 -37.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258875269.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.399 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds