Wall clock time and date at job start Mon Mar 30 2020 02:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00315 * 2 1 4 4 H 1.48507 * 109.47042 * 270.00096 * 3 2 1 5 5 H 1.48504 * 109.47030 * 29.99797 * 3 2 1 6 6 H 1.48499 * 109.47364 * 149.99853 * 3 2 1 7 7 C 1.37886 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99133 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00121 * 359.97438 * 7 2 1 10 10 H 1.08992 * 110.89378 * 303.83469 * 9 7 2 11 11 C 1.54913 * 110.97578 * 179.97438 * 9 7 2 12 12 O 1.44192 * 103.07554 * 206.33444 * 11 9 7 13 13 C 1.43369 * 107.29099 * 21.43611 * 12 11 9 14 14 H 1.08998 * 109.63077 * 240.93935 * 13 12 11 15 15 C 1.52995 * 109.62883 * 120.55017 * 13 12 11 16 16 H 1.09003 * 110.59505 * 308.00282 * 15 13 12 17 17 C 1.55092 * 110.83274 * 71.03049 * 15 13 12 18 18 C 1.54598 * 102.84998 * 155.84640 * 17 15 13 19 19 C 1.54000 * 105.22213 * 338.15300 * 18 17 15 20 20 N 1.47897 * 107.05672 * 358.72428 * 19 18 17 21 21 O 1.43748 * 108.78933 * 0.67155 * 13 12 11 22 22 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.69570 * 87.93269 * 11 9 7 24 24 H 1.09006 * 110.69513 * 324.73177 * 11 9 7 25 25 H 1.09003 * 110.70966 * 37.53639 * 17 15 13 26 26 H 1.09003 * 110.81580 * 274.20731 * 17 15 13 27 27 H 1.09002 * 110.31193 * 219.18658 * 18 17 15 28 28 H 1.09000 * 110.30788 * 97.11602 * 18 17 15 29 29 H 1.09000 * 109.91521 * 118.07714 * 19 18 17 30 30 H 1.08997 * 109.91264 * 239.37252 * 19 18 17 31 31 H 1.00899 * 111.00037 * 264.81576 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.5659 -2.5517 0.8478 11 6 2.2263 -3.7028 0.0015 12 8 1.4532 -4.7490 -0.6205 13 6 0.4146 -4.1171 -1.3804 14 1 -0.5584 -4.4297 -1.0013 15 6 0.5431 -4.5108 -2.8532 16 1 1.5559 -4.3278 -3.2120 17 6 0.1499 -5.9963 -3.0633 18 6 -0.2664 -6.0345 -4.5517 19 6 -0.6225 -4.5796 -4.9095 20 7 -0.4471 -3.7754 -3.6807 21 8 0.5460 -2.6917 -1.2482 22 1 -0.4850 0.8401 -0.0004 23 1 2.4982 -3.9784 1.0204 24 1 3.1152 -3.4781 -0.5881 25 1 -0.6881 -6.2678 -2.4213 26 1 1.0023 -6.6517 -2.8843 27 1 -1.1343 -6.6803 -4.6854 28 1 0.5625 -6.3835 -5.1675 29 1 0.0451 -4.2152 -5.6903 30 1 -1.6577 -4.5228 -5.2459 31 1 -1.3221 -3.6703 -3.1894 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258875269.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:07 Heat of formation + Delta-G solvation = -113.897362 kcal Electronic energy + Delta-G solvation = -14766.729112 eV Core-core repulsion = 12239.925470 eV Total energy + Delta-G solvation = -2526.803642 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.11692 -39.06545 -35.79450 -34.64022 -31.92443 -30.84283 -29.74247 -26.83517 -24.82116 -23.20131 -22.09113 -21.38337 -18.96246 -18.10104 -17.53198 -16.74703 -16.49495 -16.24929 -15.51295 -15.14011 -14.69673 -14.52349 -14.20415 -13.70762 -13.57573 -13.07496 -12.79273 -12.60763 -12.49801 -12.32050 -12.12666 -12.07215 -11.48094 -11.25891 -10.86603 -10.66892 -10.23025 -9.51478 -8.25053 -6.47210 1.41424 1.44038 1.54319 2.36731 2.60152 3.00759 3.39088 3.52192 3.80359 3.86659 4.04740 4.18640 4.23377 4.38066 4.43727 4.55575 4.56795 4.64852 4.82359 4.93416 5.02300 5.07331 5.15142 5.30272 5.33871 5.63122 5.85882 6.01384 6.38655 6.50645 6.73972 7.29347 8.84394 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043218 B = 0.008599 C = 0.007684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.722659 B = 3255.340031 C = 3642.846236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.172 3.828 10 H 0.014 0.986 11 C 0.035 3.965 12 O -0.402 6.402 13 C 0.222 3.778 14 H 0.062 0.938 15 C 0.071 3.929 16 H 0.072 0.928 17 C -0.139 4.139 18 C -0.141 4.141 19 C 0.039 3.961 20 N -0.678 5.678 21 O -0.378 6.378 22 H 0.266 0.734 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -9.782 -5.906 11.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.117 3.883 10 H 0.032 0.968 11 C -0.041 4.041 12 O -0.323 6.323 13 C 0.125 3.875 14 H 0.079 0.921 15 C -0.039 4.039 16 H 0.090 0.910 17 C -0.178 4.178 18 C -0.180 4.180 19 C -0.090 4.090 20 N -0.307 5.307 21 O -0.299 6.299 22 H 0.075 0.925 23 H 0.124 0.876 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.082 -9.217 -6.302 11.166 hybrid contribution -0.346 0.216 0.565 0.697 sum -0.264 -9.001 -5.737 10.677 Atomic orbital electron populations 1.70145 1.07878 1.28070 1.47658 1.26022 0.95727 1.03518 0.92628 0.85371 0.78921 0.77860 0.78363 1.20286 1.20293 1.18035 1.21247 0.93389 0.90352 1.54130 0.90751 1.21418 0.88789 0.94641 0.83499 0.96783 1.24252 0.94951 0.86407 0.98485 1.88655 1.44939 1.32184 1.66477 1.24054 0.90517 0.81304 0.91588 0.92077 1.22982 0.97596 0.92701 0.90627 0.90965 1.23041 1.01911 0.95316 0.97527 1.22772 1.02652 0.97655 0.94920 1.22878 1.02164 0.91112 0.92886 1.62612 1.13259 1.47795 1.07079 1.89587 1.78621 1.18848 1.42821 0.92509 0.87594 0.91529 0.91115 0.90115 0.89385 0.90245 0.90967 0.89875 0.84672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.29 13.21 21.45 0.28 -54.00 16 2 C 0.02 1.36 5.46 84.66 0.46 1.83 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.55 -31.31 8.83 25.60 0.23 -31.08 16 8 H 0.07 3.97 7.76 -2.91 -0.02 3.95 16 9 C 0.17 9.18 3.25 30.50 0.10 9.28 16 10 H 0.01 0.83 8.14 -2.39 -0.02 0.81 16 11 C 0.04 1.53 7.51 72.64 0.55 2.07 16 12 O -0.40 -16.96 11.16 -126.22 -1.41 -18.37 16 13 C 0.22 9.55 3.53 71.98 0.25 9.80 16 14 H 0.06 2.55 8.03 -2.39 -0.02 2.53 16 15 C 0.07 2.58 3.29 45.31 0.15 2.73 16 16 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 17 C -0.14 -3.75 6.47 31.85 0.21 -3.54 16 18 C -0.14 -3.04 6.92 31.48 0.22 -2.82 16 19 C 0.04 0.99 7.52 86.45 0.65 1.64 16 20 N -0.68 -23.77 7.16 -480.08 -3.44 -27.21 16 21 O -0.38 -20.43 10.79 -126.22 -1.36 -21.79 16 22 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 23 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 24 H 0.07 2.84 8.01 -2.38 -0.02 2.83 16 25 H 0.07 1.84 7.97 -2.39 -0.02 1.83 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.34 11.72 8.62 -89.69 -0.77 10.95 16 Total: -1.00 -65.51 259.79 -0.75 -66.25 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.34 Total: 19.45 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 2.81 Total: -10.09 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -3.15 Total: -81.21 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -2.77 Total: -40.16 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.51 -0.75 -66.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258875269.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.643 kcal (2) G-P(sol) polarization free energy of solvation -65.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds