Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99783 * 2 1 4 4 H 1.48496 * 109.47167 * 85.07797 * 3 2 1 5 5 H 1.48496 * 109.47178 * 205.08027 * 3 2 1 6 6 H 1.48504 * 109.47143 * 325.08152 * 3 2 1 7 7 C 1.37878 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00141 * 172.62906 * 7 2 1 9 9 C 1.50697 * 119.99586 * 352.62582 * 7 2 1 10 10 H 1.08995 * 109.50713 * 56.19615 * 9 7 2 11 11 C 1.53095 * 109.50534 * 296.11392 * 9 7 2 12 12 O 1.43021 * 109.23141 * 183.17001 * 11 9 7 13 13 C 1.43002 * 113.72996 * 58.71907 * 12 11 9 14 14 C 1.53088 * 109.29231 * 301.31141 * 13 12 11 15 15 H 1.08999 * 109.56484 * 296.41700 * 14 13 12 16 16 C 1.53095 * 109.34279 * 176.33191 * 14 13 12 17 17 O 1.43000 * 109.31183 * 183.71237 * 16 14 13 18 18 C 1.43018 * 113.71667 * 58.69559 * 17 16 14 19 19 C 1.53096 * 109.22406 * 301.26042 * 18 17 16 20 20 N 1.46989 * 109.29483 * 56.90173 * 19 18 17 21 21 H 0.96998 * 120.00345 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.51276 * 303.10072 * 11 9 7 23 23 H 1.09001 * 109.50868 * 63.19729 * 11 9 7 24 24 H 1.09000 * 109.50325 * 61.25846 * 13 12 11 25 25 H 1.08999 * 109.49855 * 181.33430 * 13 12 11 26 26 H 1.09003 * 109.49653 * 303.66626 * 16 14 13 27 27 H 1.09002 * 109.49476 * 63.72604 * 16 14 13 28 28 H 1.09005 * 109.51277 * 61.18602 * 18 17 16 29 29 H 1.09003 * 109.51081 * 181.33904 * 18 17 16 30 30 H 1.09001 * 109.50099 * 176.84714 * 19 18 17 31 31 H 1.08996 * 109.49884 * 296.91905 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3926 2.1065 1.3949 5 1 3.5948 1.4125 -0.5935 6 1 1.5023 2.6204 -0.8014 7 6 2.0046 -1.1940 -0.0005 8 1 3.0779 -1.1978 -0.1205 9 6 1.2604 -2.4938 0.1664 10 1 0.4929 -2.5751 -0.6031 11 6 0.6042 -2.5331 1.5490 12 8 -0.0379 -3.7983 1.7299 13 6 0.8486 -4.9148 1.6180 14 6 1.5087 -4.9002 0.2368 15 1 0.7477 -5.0294 -0.5328 16 6 2.5256 -6.0412 0.1487 17 8 3.2034 -5.9745 -1.1087 18 6 3.8902 -4.7392 -1.3272 19 6 2.8868 -3.5851 -1.2564 20 7 2.2009 -3.6169 0.0433 21 1 -0.4850 0.8400 0.0004 22 1 1.3655 -2.3981 2.3173 23 1 -0.1345 -1.7351 1.6242 24 1 1.6164 -4.8485 2.3889 25 1 0.2861 -5.8399 1.7433 26 1 3.2497 -5.9464 0.9579 27 1 2.0083 -6.9968 0.2335 28 1 4.6530 -4.6061 -0.5599 29 1 4.3604 -4.7530 -2.3105 30 1 3.4139 -2.6374 -1.3665 31 1 2.1550 -3.6897 -2.0573 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259626795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = -104.907935 kcal Electronic energy + Delta-G solvation = -15258.605652 eV Core-core repulsion = 12732.191821 eV Total energy + Delta-G solvation = -2526.413832 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.14766 -38.82388 -36.28074 -34.80148 -32.97188 -31.15949 -27.66635 -26.88506 -26.44861 -23.59303 -22.24896 -21.01477 -18.59905 -17.70918 -17.47303 -16.73444 -16.50712 -16.35599 -15.85305 -15.52750 -15.39947 -14.85159 -14.66971 -13.82188 -13.01440 -12.89779 -12.79248 -12.69112 -12.52267 -12.43630 -12.06856 -12.04943 -11.34939 -11.15043 -10.73513 -10.67508 -10.17814 -9.21722 -8.24184 -6.35417 1.40863 1.42366 1.53038 2.36280 2.84531 2.99375 3.03610 3.19102 3.84924 4.06519 4.10368 4.15078 4.30095 4.39435 4.47230 4.59115 4.69456 4.73958 4.82005 4.88128 4.96255 5.02202 5.22331 5.39642 5.59204 5.86774 6.10757 6.13305 6.32685 6.53302 6.77824 7.33955 8.85142 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036118 B = 0.011493 C = 0.009217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.057464 B = 2435.686842 C = 3037.238149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.264 1.264 6 H -0.285 1.285 7 C -0.525 4.525 8 H 0.067 0.933 9 C 0.193 3.807 10 H -0.037 1.037 11 C 0.086 3.914 12 O -0.416 6.416 13 C 0.070 3.930 14 C 0.004 3.996 15 H 0.023 0.977 16 C 0.079 3.921 17 O -0.399 6.399 18 C 0.071 3.929 19 C 0.028 3.972 20 N -0.529 5.529 21 H 0.266 0.734 22 H 0.039 0.961 23 H 0.082 0.918 24 H 0.064 0.936 25 H 0.123 0.877 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.084 0.916 31 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -8.845 1.128 10.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.188 1.188 6 H -0.211 1.211 7 C -0.563 4.563 8 H 0.085 0.915 9 C 0.086 3.914 10 H -0.020 1.020 11 C 0.010 3.990 12 O -0.335 6.335 13 C -0.007 4.007 14 C -0.106 4.106 15 H 0.041 0.959 16 C 0.002 3.998 17 O -0.318 6.318 18 C -0.005 4.005 19 C -0.101 4.101 20 N -0.255 5.255 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.141 0.859 26 H 0.088 0.912 27 H 0.143 0.857 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 6.057 -8.853 1.399 10.817 hybrid contribution -0.521 1.447 -0.715 1.696 sum 5.536 -7.405 0.684 9.271 Atomic orbital electron populations 1.70081 1.07550 1.27997 1.50440 1.25833 0.95638 1.02895 0.94179 0.85402 0.78686 0.78427 0.78319 1.19807 1.18815 1.21069 1.21242 0.94118 0.90300 1.50654 0.91452 1.19621 0.89586 0.89478 0.92723 1.01953 1.22640 0.96184 0.83585 0.96638 1.87863 1.37268 1.15800 1.92618 1.22734 0.93657 0.90137 0.94199 1.23106 0.96446 0.92403 0.98609 0.95932 1.22691 0.93541 0.97403 0.86170 1.87895 1.68820 1.36781 1.38274 1.22782 0.92983 0.81604 1.03157 1.22660 0.97190 1.00860 0.89359 1.62543 1.29786 1.01882 1.31298 0.92493 0.94261 0.89992 0.91789 0.85880 0.91152 0.85729 0.91489 0.86424 0.89759 0.97272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.36 11.98 21.45 0.26 -53.10 16 2 C 0.01 0.78 5.25 84.65 0.44 1.22 16 3 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.53 -28.58 7.76 25.60 0.20 -28.38 16 8 H 0.07 3.58 6.71 -2.91 -0.02 3.56 16 9 C 0.19 10.16 1.84 44.18 0.08 10.24 16 10 H -0.04 -2.28 8.13 -2.39 -0.02 -2.30 16 11 C 0.09 4.36 6.07 72.01 0.44 4.80 16 12 O -0.42 -18.86 10.83 -148.98 -1.61 -20.48 16 13 C 0.07 2.40 6.28 72.01 0.45 2.86 16 14 C 0.00 0.15 2.51 44.94 0.11 0.26 16 15 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 16 C 0.08 2.23 6.28 72.01 0.45 2.68 16 17 O -0.40 -12.57 10.83 -148.98 -1.61 -14.18 16 18 C 0.07 2.17 7.01 72.01 0.50 2.67 16 19 C 0.03 1.10 5.36 86.32 0.46 1.57 16 20 N -0.53 -23.07 4.50 -848.59 -3.82 -26.89 16 21 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 22 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.08 4.57 6.77 -2.39 -0.02 4.56 16 24 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.08 3.51 6.35 -2.39 -0.02 3.50 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -63.90 246.90 -0.51 -64.41 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.11 Total: 7.59 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 3.15 Total: -2.08 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -3.56 Total: -79.99 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -3.23 Total: -34.66 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.90 -0.51 -64.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.497 kcal (2) G-P(sol) polarization free energy of solvation -63.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds