Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99592 * 2 1 4 4 H 1.48497 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47107 * 299.99873 * 3 2 1 6 6 H 1.48506 * 109.46922 * 59.99598 * 3 2 1 7 7 C 1.37873 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99719 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50364 * 60.07243 * 9 7 2 11 11 C 1.53090 * 109.50121 * 299.99691 * 9 7 2 12 12 O 1.43025 * 109.23827 * 296.93750 * 11 9 7 13 13 C 1.43007 * 113.71923 * 301.28426 * 12 11 9 14 14 C 1.53086 * 109.32511 * 58.67792 * 13 12 11 15 15 H 1.08999 * 109.55842 * 63.26284 * 14 13 12 16 16 C 1.53003 * 109.39741 * 183.62991 * 14 13 12 17 17 O 1.43003 * 109.31104 * 176.34654 * 16 14 13 18 18 C 1.43019 * 113.71286 * 301.30970 * 17 16 14 19 19 C 1.53092 * 109.23074 * 58.73777 * 18 17 16 20 20 N 1.47002 * 109.29266 * 303.11033 * 19 18 17 21 21 H 0.96989 * 120.00563 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.51073 * 177.01103 * 11 9 7 23 23 H 1.08995 * 109.50757 * 56.86436 * 11 9 7 24 24 H 1.09002 * 109.50079 * 178.64241 * 13 12 11 25 25 H 1.09000 * 109.50202 * 298.71379 * 13 12 11 26 26 H 1.09000 * 109.48011 * 56.40231 * 16 14 13 27 27 H 1.09005 * 109.50558 * 296.30850 * 16 14 13 28 28 H 1.08995 * 109.51133 * 298.80731 * 18 17 16 29 29 H 1.09000 * 109.54987 * 178.68147 * 18 17 16 30 30 H 1.08997 * 109.50032 * 183.16152 * 19 18 17 31 31 H 1.08997 * 109.49817 * 63.05636 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6256 -2.5582 -0.8901 11 6 0.3703 -2.5807 1.2500 12 8 1.2017 -2.5765 2.4138 13 6 2.1426 -3.6527 2.4525 14 6 3.0418 -3.5844 1.2154 15 1 3.6191 -2.6600 1.2346 16 6 3.9890 -4.7859 1.2086 17 8 4.7690 -4.7664 0.0102 18 6 3.9861 -4.8013 -1.1862 19 6 3.0399 -3.5980 -1.2049 20 7 2.2060 -3.6169 0.0056 21 1 -0.4850 0.8399 -0.0004 22 1 -0.2144 -3.5002 1.2237 23 1 -0.3008 -1.7224 1.2789 24 1 2.7536 -3.5698 3.3514 25 1 1.6085 -4.6029 2.4620 26 1 3.4078 -5.7071 1.2497 27 1 4.6499 -4.7332 2.0739 28 1 3.4041 -5.7225 -1.2137 29 1 4.6442 -4.7603 -2.0541 30 1 2.4019 -3.6504 -2.0871 31 1 3.6227 -2.6773 -1.2309 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259626806.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = -78.809857 kcal Electronic energy + Delta-G solvation = -15471.561955 eV Core-core repulsion = 12946.279821 eV Total energy + Delta-G solvation = -2525.282134 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.53111 -37.15429 -34.35858 -32.75419 -31.28771 -29.29733 -25.63476 -25.24598 -24.67392 -22.20161 -20.53146 -19.20938 -16.32790 -15.97415 -15.93279 -15.05138 -14.89470 -14.55036 -14.21972 -13.70300 -13.45931 -13.28227 -12.87453 -11.66330 -11.40343 -11.32977 -10.96799 -10.92841 -10.76724 -10.60952 -10.38318 -9.88020 -9.77886 -9.44018 -9.17038 -8.59440 -8.23946 -7.33818 -6.07514 -4.16980 3.25754 3.34095 3.38031 4.23288 4.37863 4.73626 4.96025 5.22556 5.44046 5.51047 5.64030 5.73284 5.78969 5.86920 6.00932 6.05814 6.26782 6.34315 6.54915 6.63696 6.77743 6.84847 7.08816 7.47198 7.51006 7.75640 7.93276 8.04040 8.14402 8.42135 8.85568 9.50014 10.95163 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.012660 C = 0.011043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.872891 B = 2211.152622 C = 2535.019834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.070 3.930 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.177 3.823 10 H 0.050 0.950 11 C 0.072 3.928 12 O -0.376 6.376 13 C 0.077 3.923 14 C 0.017 3.983 15 H 0.065 0.935 16 C 0.071 3.929 17 O -0.391 6.391 18 C 0.063 3.937 19 C 0.026 3.974 20 N -0.531 5.531 21 H 0.263 0.737 22 H 0.012 0.988 23 H 0.124 0.876 24 H 0.079 0.921 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.312 -7.529 0.688 8.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.075 0.925 9 C 0.070 3.930 10 H 0.067 0.933 11 C -0.004 4.004 12 O -0.294 6.294 13 C -0.002 4.002 14 C -0.093 4.093 15 H 0.083 0.917 16 C -0.007 4.007 17 O -0.309 6.309 18 C -0.014 4.014 19 C -0.103 4.103 20 N -0.257 5.257 21 H 0.073 0.927 22 H 0.030 0.970 23 H 0.142 0.858 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.063 -7.697 0.830 8.743 hybrid contribution 0.600 1.568 -0.303 1.706 sum 4.663 -6.129 0.527 7.719 Atomic orbital electron populations 1.69767 1.05926 1.26846 1.50576 1.24857 0.94825 0.99140 0.94420 0.86505 0.80083 0.83640 0.77581 1.19945 1.21040 1.20832 1.21508 0.93113 0.91139 1.50960 0.92480 1.19960 0.90759 0.86619 0.95675 0.93256 1.22898 0.92401 1.00277 0.84864 1.87964 1.49650 1.48351 1.43413 1.22302 0.91208 0.90853 0.95794 1.22754 0.95123 0.98236 0.93172 0.91704 1.22599 0.93573 0.97246 0.87242 1.87896 1.33667 1.95091 1.14266 1.22702 0.93716 0.97816 0.87125 1.22546 0.95785 0.97453 0.94516 1.62884 1.16293 1.46272 1.00240 0.92683 0.96970 0.85840 0.90294 0.94168 0.93086 0.89323 0.93177 0.89388 0.90627 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.91 11.30 55.43 0.63 -24.28 16 2 C 0.07 1.91 5.30 -17.82 -0.09 1.81 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.28 6.80 -34.44 -0.23 -14.51 16 8 H 0.06 1.59 5.77 -52.49 -0.30 1.29 16 9 C 0.18 4.39 2.39 -68.76 -0.16 4.23 16 10 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 11 C 0.07 1.77 6.23 37.20 0.23 2.01 16 12 O -0.38 -8.99 10.53 -35.23 -0.37 -9.36 16 13 C 0.08 1.49 6.28 37.20 0.23 1.72 16 14 C 0.02 0.34 2.19 -67.57 -0.15 0.19 16 15 H 0.07 1.50 6.60 -51.93 -0.34 1.16 16 16 C 0.07 1.17 6.28 37.16 0.23 1.41 16 17 O -0.39 -6.97 10.83 -35.23 -0.38 -7.35 16 18 C 0.06 1.03 7.01 37.21 0.26 1.29 16 19 C 0.03 0.50 5.34 -3.72 -0.02 0.48 16 20 N -0.53 -11.43 4.66 -219.62 -1.02 -12.46 16 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.12 3.32 6.00 -51.93 -0.31 3.00 16 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.05 1.11 6.65 -51.93 -0.35 0.76 16 LS Contribution 242.60 15.07 3.66 3.66 Total: -1.00 -29.02 242.60 -6.46 -35.48 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.24 Total: -0.82 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.30 Total: -1.37 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.40 Total: -36.74 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.75 Total: -16.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.02 -6.46 -35.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626806.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.328 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds