Wall clock time and date at job start Mon Mar 30 2020 02:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99592 * 2 1 4 4 H 1.48497 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47107 * 299.99873 * 3 2 1 6 6 H 1.48506 * 109.46922 * 59.99598 * 3 2 1 7 7 C 1.37873 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99719 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50364 * 60.07243 * 9 7 2 11 11 C 1.53090 * 109.50121 * 299.99691 * 9 7 2 12 12 O 1.43025 * 109.23827 * 296.93750 * 11 9 7 13 13 C 1.43007 * 113.71923 * 301.28426 * 12 11 9 14 14 C 1.53086 * 109.32511 * 58.67792 * 13 12 11 15 15 H 1.08999 * 109.55842 * 63.26284 * 14 13 12 16 16 C 1.53003 * 109.39741 * 183.62991 * 14 13 12 17 17 O 1.43003 * 109.31104 * 176.34654 * 16 14 13 18 18 C 1.43019 * 113.71286 * 301.30970 * 17 16 14 19 19 C 1.53092 * 109.23074 * 58.73777 * 18 17 16 20 20 N 1.47002 * 109.29266 * 303.11033 * 19 18 17 21 21 H 0.96989 * 120.00563 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.51073 * 177.01103 * 11 9 7 23 23 H 1.08995 * 109.50757 * 56.86436 * 11 9 7 24 24 H 1.09002 * 109.50079 * 178.64241 * 13 12 11 25 25 H 1.09000 * 109.50202 * 298.71379 * 13 12 11 26 26 H 1.09000 * 109.48011 * 56.40231 * 16 14 13 27 27 H 1.09005 * 109.50558 * 296.30850 * 16 14 13 28 28 H 1.08995 * 109.51133 * 298.80731 * 18 17 16 29 29 H 1.09000 * 109.54987 * 178.68147 * 18 17 16 30 30 H 1.08997 * 109.50032 * 183.16152 * 19 18 17 31 31 H 1.08997 * 109.49817 * 63.05636 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8901 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 1 0.6256 -2.5582 -0.8901 11 6 0.3703 -2.5807 1.2500 12 8 1.2017 -2.5765 2.4138 13 6 2.1426 -3.6527 2.4525 14 6 3.0418 -3.5844 1.2154 15 1 3.6191 -2.6600 1.2346 16 6 3.9890 -4.7859 1.2086 17 8 4.7690 -4.7664 0.0102 18 6 3.9861 -4.8013 -1.1862 19 6 3.0399 -3.5980 -1.2049 20 7 2.2060 -3.6169 0.0056 21 1 -0.4850 0.8399 -0.0004 22 1 -0.2144 -3.5002 1.2237 23 1 -0.3008 -1.7224 1.2789 24 1 2.7536 -3.5698 3.3514 25 1 1.6085 -4.6029 2.4620 26 1 3.4078 -5.7071 1.2497 27 1 4.6499 -4.7332 2.0739 28 1 3.4041 -5.7225 -1.2137 29 1 4.6442 -4.7603 -2.0541 30 1 2.4019 -3.6504 -2.0871 31 1 3.6227 -2.6773 -1.2309 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259626806.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:18 Heat of formation + Delta-G solvation = -101.100080 kcal Electronic energy + Delta-G solvation = -15472.528532 eV Core-core repulsion = 12946.279821 eV Total energy + Delta-G solvation = -2526.248711 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13913 -38.74412 -36.11965 -34.67989 -32.86920 -31.05637 -27.48084 -26.85466 -26.40414 -23.83142 -22.16097 -20.98013 -18.28865 -17.62943 -17.44761 -16.76149 -16.60543 -16.12904 -15.78324 -15.46066 -15.21630 -14.94465 -14.63412 -13.53302 -13.13331 -12.86281 -12.76325 -12.68005 -12.42252 -12.33254 -12.19678 -11.72860 -11.48486 -11.15156 -10.85854 -10.51102 -10.03557 -9.16089 -8.14456 -6.31782 1.32524 1.35716 1.45094 2.35956 2.90370 3.06838 3.14156 3.30514 3.93760 4.13777 4.21823 4.26570 4.40577 4.45587 4.55469 4.64960 4.71488 4.79413 4.86693 5.00206 5.04100 5.11929 5.18928 5.45611 5.74640 5.98148 6.16204 6.17360 6.34022 6.59334 6.77685 7.37268 8.85100 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.033570 B = 0.012660 C = 0.011043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.872891 B = 2211.152622 C = 2535.019834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.024 3.976 3 Si 0.950 3.050 4 H -0.277 1.277 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.042 0.958 9 C 0.179 3.821 10 H 0.023 0.977 11 C 0.081 3.919 12 O -0.400 6.400 13 C 0.070 3.930 14 C 0.016 3.984 15 H 0.027 0.973 16 C 0.077 3.923 17 O -0.402 6.402 18 C 0.071 3.929 19 C 0.024 3.976 20 N -0.529 5.529 21 H 0.265 0.735 22 H 0.027 0.973 23 H 0.095 0.905 24 H 0.110 0.890 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.117 0.883 28 H 0.068 0.932 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.421 -8.788 1.089 10.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.060 0.940 9 C 0.071 3.929 10 H 0.041 0.959 11 C 0.004 3.996 12 O -0.318 6.318 13 C -0.007 4.007 14 C -0.094 4.094 15 H 0.045 0.955 16 C 0.000 4.000 17 O -0.320 6.320 18 C -0.006 4.006 19 C -0.105 4.105 20 N -0.254 5.254 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.113 0.887 24 H 0.128 0.872 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.087 0.913 29 H 0.133 0.867 30 H 0.096 0.904 31 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.182 -8.971 1.228 10.433 hybrid contribution 0.269 1.922 -0.424 1.987 sum 5.452 -7.049 0.804 8.947 Atomic orbital electron populations 1.69872 1.06821 1.27523 1.51040 1.25539 0.95644 1.01973 0.94406 0.85632 0.78675 0.80277 0.77777 1.20209 1.20143 1.20584 1.21620 0.92436 0.92495 1.50823 0.94020 1.19750 0.91245 0.87111 0.94754 0.95910 1.22603 0.92291 0.99721 0.85017 1.87904 1.50553 1.50540 1.42842 1.22631 0.90821 0.90437 0.96811 1.22844 0.95281 0.98494 0.92750 0.95487 1.22690 0.93473 0.95938 0.87931 1.87893 1.34301 1.94955 1.14897 1.22774 0.93573 0.96502 0.87738 1.22640 0.95919 0.98027 0.93931 1.62872 1.16691 1.44121 1.01719 0.92544 0.95486 0.88676 0.87159 0.92066 0.91101 0.86513 0.91337 0.86685 0.90408 0.96133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.97 11.30 21.45 0.24 -51.73 16 2 C 0.02 1.35 5.30 84.65 0.45 1.79 16 3 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.53 -29.59 6.80 25.60 0.17 -29.42 16 8 H 0.04 2.39 5.77 -2.91 -0.02 2.38 16 9 C 0.18 9.08 2.39 44.18 0.11 9.18 16 10 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 11 C 0.08 4.00 6.23 72.01 0.45 4.45 16 12 O -0.40 -18.94 10.53 -148.98 -1.57 -20.51 16 13 C 0.07 2.57 6.28 72.01 0.45 3.02 16 14 C 0.02 0.62 2.19 44.91 0.10 0.72 16 15 H 0.03 1.26 6.60 -2.39 -0.02 1.24 16 16 C 0.08 2.29 6.28 71.98 0.45 2.74 16 17 O -0.40 -13.14 10.83 -148.98 -1.61 -14.75 16 18 C 0.07 2.12 7.01 72.01 0.50 2.62 16 19 C 0.02 0.91 5.34 86.31 0.46 1.37 16 20 N -0.53 -22.47 4.66 -848.73 -3.95 -26.43 16 21 H 0.27 14.33 8.31 -92.72 -0.77 13.56 16 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.10 5.25 6.00 -2.39 -0.01 5.23 16 24 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 27 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.02 0.91 6.65 -2.39 -0.02 0.89 16 Total: -1.00 -62.80 242.60 -0.61 -63.41 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.11 Total: 6.78 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 3.14 Total: -3.52 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -3.71 Total: -78.16 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -3.18 Total: -35.26 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.80 -0.61 -63.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626806.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.693 kcal (2) G-P(sol) polarization free energy of solvation -62.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds