Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99527 * 2 1 4 4 H 1.48500 * 109.46883 * 239.99624 * 3 2 1 5 5 H 1.48494 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47167 * 119.99971 * 3 2 1 7 7 C 1.37874 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99480 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.59176 * 301.13493 * 9 7 2 11 11 C 1.55250 * 109.60232 * 61.44596 * 9 7 2 12 12 S 1.84150 * 100.97721 * 160.73390 * 11 9 7 13 13 C 1.82642 * 95.62298 * 325.16077 * 12 11 9 14 14 C 1.53501 * 110.38033 * 140.50520 * 13 12 11 15 15 C 1.55189 * 102.62294 * 141.28983 * 14 13 12 16 16 N 1.48638 * 103.39220 * 323.54524 * 15 14 13 17 17 C 1.48216 * 105.85955 * 38.57334 * 16 15 14 18 18 C 1.52606 * 105.80092 * 19.47445 * 13 12 11 19 19 H 0.97004 * 120.00358 * 0.02562 * 1 2 3 20 20 H 1.09001 * 111.11866 * 42.81025 * 11 9 7 21 21 H 1.08999 * 111.15535 * 278.67758 * 11 9 7 22 22 H 1.09004 * 110.78253 * 259.57113 * 14 13 12 23 23 H 1.08995 * 110.78090 * 22.82314 * 14 13 12 24 24 H 1.09005 * 110.63699 * 205.06570 * 15 14 13 25 25 H 1.09001 * 110.63455 * 82.02252 * 15 14 13 26 26 H 1.00901 * 110.99711 * 278.03519 * 16 15 14 27 27 H 1.08990 * 110.03221 * 94.13414 * 17 16 15 28 28 H 1.09000 * 110.02929 * 215.56237 * 17 16 15 29 29 H 1.09000 * 108.95527 * 123.58253 * 18 13 12 30 30 H 1.09001 * 108.95165 * 242.15600 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6081 -2.5500 0.8793 11 6 0.3857 -2.6009 -1.2844 12 16 0.0772 -4.4150 -1.3565 13 6 1.7054 -4.9002 -0.6862 14 6 1.5555 -6.0879 0.2747 15 6 2.8079 -6.9455 -0.0483 16 7 2.9659 -6.7845 -1.5174 17 6 2.6323 -5.3699 -1.8081 18 6 2.2475 -3.6634 0.0246 19 1 -0.4851 0.8400 -0.0004 20 1 0.9404 -2.2619 -2.1593 21 1 -0.5472 -2.0479 -1.1753 22 1 1.5741 -5.7514 1.3113 23 1 0.6400 -6.6412 0.0657 24 1 2.6339 -7.9909 0.2072 25 1 3.6824 -6.5612 0.4766 26 1 2.3531 -7.4107 -2.0178 27 1 3.5401 -4.7670 -1.8194 28 1 2.1227 -5.2963 -2.7688 29 1 2.4683 -3.9190 1.0610 30 1 3.1699 -3.3500 -0.4642 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259628592.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = -10.357796 kcal Electronic energy + Delta-G solvation = -12610.614554 eV Core-core repulsion = 10531.053595 eV Total energy + Delta-G solvation = -2079.560959 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.66740 -34.98250 -32.03952 -29.53223 -28.61767 -25.54512 -24.61726 -21.79751 -20.55730 -19.04162 -16.75795 -16.51447 -15.12549 -14.70685 -14.23912 -13.87837 -13.47290 -13.03898 -12.66563 -12.20755 -11.71215 -11.51062 -11.30835 -11.04945 -10.96015 -10.76788 -10.57437 -10.28497 -9.86822 -9.49302 -9.47078 -8.83083 -8.63655 -8.44238 -6.91450 -6.16202 -4.22556 2.66379 3.22540 3.29629 3.31003 3.36137 4.32078 4.42647 4.86563 5.12797 5.17242 5.36541 5.46806 5.72003 5.74482 5.95947 6.11403 6.23036 6.30208 6.37540 6.46450 6.62965 6.68035 6.86321 6.86916 7.36588 7.45191 7.61875 7.81465 8.18322 8.79629 9.42976 10.91507 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.051054 B = 0.009047 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.301939 B = 3094.114496 C = 3342.549139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.048 3.952 10 H 0.040 0.960 11 C -0.014 4.014 12 S -0.371 6.371 13 C -0.029 4.029 14 C -0.132 4.132 15 C 0.044 3.956 16 N -0.675 5.675 17 C 0.059 3.941 18 C -0.106 4.106 19 H 0.264 0.736 20 H 0.069 0.931 21 H 0.108 0.892 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.334 0.666 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 -9.098 -0.932 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.078 0.922 9 C 0.027 3.973 10 H 0.058 0.942 11 C -0.161 4.161 12 S -0.142 6.142 13 C -0.141 4.141 14 C -0.172 4.172 15 C -0.087 4.087 16 N -0.301 5.301 17 C -0.073 4.073 18 C -0.145 4.145 19 H 0.074 0.926 20 H 0.087 0.913 21 H 0.126 0.874 22 H 0.099 0.901 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.148 0.852 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.833 -9.564 -1.353 10.066 hybrid contribution 0.234 1.725 0.475 1.805 sum 3.067 -7.839 -0.878 8.463 Atomic orbital electron populations 1.69902 1.05978 1.27127 1.49520 1.25020 0.94927 0.99389 0.94555 0.86582 0.79583 0.82707 0.78765 1.20109 1.21169 1.20134 1.21098 0.92858 0.89808 1.51855 0.92210 1.19575 0.92230 0.92253 0.93220 0.94157 1.24758 1.04422 0.84743 1.02202 1.87275 1.25095 1.16327 1.85498 1.23728 0.93856 0.98895 0.97578 1.23069 0.98842 0.95595 0.99723 1.23185 0.97131 0.99187 0.89206 1.62878 1.55871 1.05117 1.06265 1.23107 0.97839 0.89043 0.97295 1.22171 1.00680 0.92430 0.99172 0.92583 0.91271 0.87372 0.90131 0.91051 0.91014 0.90123 0.85180 0.89909 0.90451 0.92240 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.55 11.86 55.43 0.66 -23.89 16 2 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 3 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.56 8.42 -34.44 -0.29 -13.85 16 8 H 0.06 1.54 7.52 -52.48 -0.39 1.15 16 9 C 0.05 1.15 2.46 -90.44 -0.22 0.93 16 10 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.01 -0.33 6.21 38.35 0.24 -0.09 16 12 S -0.37 -7.60 21.61 -107.50 -2.32 -9.93 16 13 C -0.03 -0.52 1.04 -90.60 -0.09 -0.62 16 14 C -0.13 -2.01 6.20 -25.31 -0.16 -2.17 16 15 C 0.04 0.57 7.56 -1.70 -0.01 0.55 16 16 N -0.68 -9.43 7.53 -110.23 -0.83 -10.26 16 17 C 0.06 0.94 6.92 -3.14 -0.02 0.92 16 18 C -0.11 -2.14 5.30 -26.80 -0.14 -2.28 16 19 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 20 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 21 H 0.11 2.77 7.16 -51.93 -0.37 2.40 16 22 H 0.08 1.22 7.38 -51.93 -0.38 0.83 16 23 H 0.07 1.10 7.82 -51.93 -0.41 0.69 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.33 4.22 8.92 -39.29 -0.35 3.87 16 27 H 0.08 1.37 7.17 -51.93 -0.37 1.00 16 28 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 29 H 0.06 1.15 7.24 -51.93 -0.38 0.77 16 30 H 0.06 1.30 6.60 -51.93 -0.34 0.96 16 LS Contribution 249.57 15.07 3.76 3.76 Total: -1.00 -26.81 249.57 -8.77 -35.58 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -4.22 Total: 4.15 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.80 Total: -14.98 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: -0.17 Total: -34.15 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -2.32 Total: -9.93 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -26.81 -8.77 -35.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628592.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.225 kcal (2) G-P(sol) polarization free energy of solvation -26.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds