Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99527 * 2 1 4 4 H 1.48500 * 109.46883 * 239.99624 * 3 2 1 5 5 H 1.48494 * 109.47510 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47167 * 119.99971 * 3 2 1 7 7 C 1.37874 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99480 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.59176 * 301.13493 * 9 7 2 11 11 C 1.55250 * 109.60232 * 61.44596 * 9 7 2 12 12 S 1.84150 * 100.97721 * 160.73390 * 11 9 7 13 13 C 1.82642 * 95.62298 * 325.16077 * 12 11 9 14 14 C 1.53501 * 110.38033 * 140.50520 * 13 12 11 15 15 C 1.55189 * 102.62294 * 141.28983 * 14 13 12 16 16 N 1.48638 * 103.39220 * 323.54524 * 15 14 13 17 17 C 1.48216 * 105.85955 * 38.57334 * 16 15 14 18 18 C 1.52606 * 105.80092 * 19.47445 * 13 12 11 19 19 H 0.97004 * 120.00358 * 0.02562 * 1 2 3 20 20 H 1.09001 * 111.11866 * 42.81025 * 11 9 7 21 21 H 1.08999 * 111.15535 * 278.67758 * 11 9 7 22 22 H 1.09004 * 110.78253 * 259.57113 * 14 13 12 23 23 H 1.08995 * 110.78090 * 22.82314 * 14 13 12 24 24 H 1.09005 * 110.63699 * 205.06570 * 15 14 13 25 25 H 1.09001 * 110.63455 * 82.02252 * 15 14 13 26 26 H 1.00901 * 110.99711 * 278.03519 * 16 15 14 27 27 H 1.08990 * 110.03221 * 94.13414 * 17 16 15 28 28 H 1.09000 * 110.02929 * 215.56237 * 17 16 15 29 29 H 1.09000 * 108.95527 * 123.58253 * 18 13 12 30 30 H 1.09001 * 108.95165 * 242.15600 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6081 -2.5500 0.8793 11 6 0.3857 -2.6009 -1.2844 12 16 0.0772 -4.4150 -1.3565 13 6 1.7054 -4.9002 -0.6862 14 6 1.5555 -6.0879 0.2747 15 6 2.8079 -6.9455 -0.0483 16 7 2.9659 -6.7845 -1.5174 17 6 2.6323 -5.3699 -1.8081 18 6 2.2475 -3.6634 0.0246 19 1 -0.4851 0.8400 -0.0004 20 1 0.9404 -2.2619 -2.1593 21 1 -0.5472 -2.0479 -1.1753 22 1 1.5741 -5.7514 1.3113 23 1 0.6400 -6.6412 0.0657 24 1 2.6339 -7.9909 0.2072 25 1 3.6824 -6.5612 0.4766 26 1 2.3531 -7.4107 -2.0178 27 1 3.5401 -4.7670 -1.8194 28 1 2.1227 -5.2963 -2.7688 29 1 2.4683 -3.9190 1.0610 30 1 3.1699 -3.3500 -0.4642 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259628592.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = -27.161376 kcal Electronic energy + Delta-G solvation = -12611.343211 eV Core-core repulsion = 10531.053595 eV Total energy + Delta-G solvation = -2080.289617 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99130 -36.76126 -33.89384 -30.99806 -29.93510 -27.50227 -26.31564 -22.95439 -22.24629 -20.62197 -18.52069 -18.05162 -16.77196 -16.33030 -15.81189 -15.45333 -14.93664 -14.65191 -14.30258 -13.60206 -13.31626 -13.00576 -12.89688 -12.87160 -12.60120 -12.43110 -12.08542 -11.92258 -11.49786 -11.31824 -11.15511 -10.70671 -10.48316 -9.78710 -8.56520 -8.19036 -6.33260 1.09064 1.40717 1.42360 1.50484 1.55308 2.39310 3.10656 3.26449 3.55528 3.88331 4.01029 4.26884 4.42111 4.45115 4.50915 4.62346 4.78332 4.80963 4.90599 4.97606 5.05993 5.11439 5.14871 5.45311 5.60257 5.69211 5.78680 6.17260 6.41399 6.75151 7.35918 8.87253 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.051054 B = 0.009047 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.301939 B = 3094.114496 C = 3342.549139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.045 3.955 10 H 0.005 0.995 11 C -0.011 4.011 12 S -0.368 6.368 13 C -0.024 4.024 14 C -0.130 4.130 15 C 0.051 3.949 16 N -0.671 5.671 17 C 0.064 3.936 18 C -0.099 4.099 19 H 0.264 0.736 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.344 0.656 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -10.343 -0.919 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.025 3.975 10 H 0.023 0.977 11 C -0.159 4.159 12 S -0.138 6.138 13 C -0.135 4.135 14 C -0.170 4.170 15 C -0.079 4.079 16 N -0.298 5.298 17 C -0.068 4.068 18 C -0.137 4.137 19 H 0.073 0.927 20 H 0.079 0.921 21 H 0.098 0.902 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.120 0.880 25 H 0.103 0.897 26 H 0.160 0.840 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.222 -10.832 -1.342 11.703 hybrid contribution -0.214 2.051 0.493 2.120 sum 4.008 -8.781 -0.849 9.690 Atomic orbital electron populations 1.70038 1.07363 1.27773 1.50383 1.25805 0.95669 1.02713 0.94235 0.85592 0.78356 0.78635 0.79032 1.19388 1.21077 1.19469 1.21445 0.93163 0.90970 1.51648 0.91991 1.19510 0.92501 0.93505 0.91991 0.97657 1.24351 1.02827 0.87251 1.01506 1.87184 1.27635 1.13075 1.85907 1.23910 0.92063 0.98843 0.98676 1.23084 1.00255 0.94700 0.98999 1.23241 0.95842 1.00505 0.88309 1.62859 1.55986 1.03789 1.07125 1.22965 0.97053 0.90434 0.96331 1.22027 0.99448 0.92097 1.00174 0.92693 0.92096 0.90244 0.89990 0.90928 0.87989 0.89726 0.84027 0.90135 0.90746 0.91355 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.01 11.86 21.45 0.25 -51.76 16 2 C 0.02 0.85 5.31 84.65 0.45 1.30 16 3 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.53 -28.29 8.42 25.60 0.22 -28.08 16 8 H 0.06 3.19 7.52 -2.91 -0.02 3.16 16 9 C 0.05 2.24 2.46 -10.68 -0.03 2.21 16 10 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 11 C -0.01 -0.54 6.21 72.75 0.45 -0.09 16 12 S -0.37 -14.92 21.61 -56.49 -1.22 -16.14 16 13 C -0.02 -0.81 1.04 -10.78 -0.01 -0.82 16 14 C -0.13 -3.62 6.20 31.51 0.20 -3.42 16 15 C 0.05 1.14 7.56 86.72 0.66 1.80 16 16 N -0.67 -16.49 7.53 -502.65 -3.78 -20.28 16 17 C 0.06 1.92 6.92 86.02 0.60 2.52 16 18 C -0.10 -3.92 5.30 30.55 0.16 -3.76 16 19 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 20 H 0.06 2.97 8.09 -2.39 -0.02 2.95 16 21 H 0.08 4.26 7.16 -2.39 -0.02 4.24 16 22 H 0.08 2.28 7.38 -2.38 -0.02 2.26 16 23 H 0.07 2.03 7.82 -2.39 -0.02 2.01 16 24 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 25 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.34 7.47 8.92 -89.69 -0.80 6.67 16 27 H 0.08 2.49 7.17 -2.39 -0.02 2.48 16 28 H 0.07 2.30 7.62 -2.39 -0.02 2.28 16 29 H 0.07 2.56 7.24 -2.39 -0.02 2.55 16 30 H 0.06 2.56 6.60 -2.39 -0.02 2.54 16 Total: -1.00 -57.39 249.57 0.29 -57.10 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.33 Total: 15.10 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 2.69 Total: -28.35 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -3.53 Total: -72.03 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -14.92 SS G_CDS: -1.22 Total: -16.14 kcal Total: -57.39 0.29 -57.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259628592.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.934 kcal (2) G-P(sol) polarization free energy of solvation -57.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds