Wall clock time and date at job start Mon Mar 30 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99916 * 2 1 4 4 H 1.48500 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46765 * 299.99943 * 3 2 1 6 6 H 1.48495 * 109.47142 * 59.99843 * 3 2 1 7 7 C 1.37873 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00461 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.35612 * 57.67567 * 9 7 2 11 11 C 1.54856 * 110.29520 * 295.19844 * 9 7 2 12 12 C 1.54797 * 104.91142 * 240.06017 * 11 9 7 13 13 N 1.47714 * 104.24954 * 336.54170 * 12 11 9 14 14 C 1.45898 * 113.71848 * 161.49825 * 13 12 11 15 15 C 1.53569 * 108.83043 * 167.70385 * 14 13 12 16 16 S 1.81800 * 109.06691 * 61.45986 * 15 14 13 17 17 C 1.82112 * 102.37963 * 310.27233 * 16 15 14 18 18 C 1.48183 * 104.30558 * 40.16156 * 13 12 11 19 19 H 1.08997 * 110.55392 * 77.75465 * 18 13 12 20 20 H 0.97001 * 120.00407 * 359.97438 * 1 2 3 21 21 H 1.08990 * 110.30973 * 121.24526 * 11 9 7 22 22 H 1.09005 * 110.45751 * 358.94529 * 11 9 7 23 23 H 1.09002 * 110.49818 * 217.80941 * 12 11 9 24 24 H 1.08997 * 110.50057 * 95.26849 * 12 11 9 25 25 H 1.09006 * 109.57645 * 287.50625 * 14 13 12 26 26 H 1.08997 * 109.58115 * 47.89918 * 14 13 12 27 27 H 1.08997 * 109.53591 * 301.59202 * 15 14 13 28 28 H 1.08996 * 109.61027 * 181.37525 * 15 14 13 29 29 H 1.08995 * 109.80423 * 291.36237 * 17 16 15 30 30 H 1.09003 * 109.80407 * 170.47829 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5878 -2.5542 -0.8639 11 6 0.4474 -2.6555 1.3140 12 6 1.0020 -3.9437 1.9691 13 7 1.5714 -4.7090 0.8412 14 6 2.5156 -5.7431 1.2510 15 6 2.7984 -6.6595 0.0516 16 16 3.5480 -5.6777 -1.2823 17 6 2.4145 -4.2578 -1.4063 18 6 2.2310 -3.6837 -0.0011 19 1 3.1866 -3.3893 0.4325 20 1 -0.4851 0.8400 0.0004 21 1 -0.6147 -2.7680 1.0969 22 1 0.6128 -1.7977 1.9659 23 1 0.1987 -4.5061 2.4451 24 1 1.7777 -3.6994 2.6948 25 1 3.4443 -5.2788 1.5829 26 1 2.0864 -6.3281 2.0644 27 1 1.8647 -7.0986 -0.2997 28 1 3.4843 -7.4520 0.3505 29 1 1.4525 -4.5864 -1.7995 30 1 2.8427 -3.4995 -2.0619 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259640132.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:35 Heat of formation + Delta-G solvation = -2.407666 kcal Electronic energy + Delta-G solvation = -12794.020153 eV Core-core repulsion = 10714.803937 eV Total energy + Delta-G solvation = -2079.216215 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.70428 -33.80046 -31.81913 -30.80379 -28.37091 -25.85698 -23.60765 -22.22680 -20.20915 -19.27191 -16.73159 -15.80636 -15.09212 -14.57720 -14.43993 -14.08728 -13.72496 -12.99624 -12.41423 -12.32344 -12.17411 -11.48537 -11.34594 -11.03329 -10.88037 -10.57883 -10.47441 -10.32335 -9.92981 -9.59370 -9.00138 -8.82798 -8.44354 -7.95902 -7.33347 -6.07461 -4.11536 2.18144 2.93333 3.26305 3.35046 3.38911 4.35161 4.48839 5.10717 5.24430 5.37229 5.44953 5.63916 5.73905 5.80828 5.85716 5.98082 6.12513 6.18671 6.31154 6.53536 6.68122 6.98841 7.09286 7.43819 7.58336 7.64989 7.79388 7.92231 8.37648 8.91355 9.53299 11.01895 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.043380 B = 0.009796 C = 0.008662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.304970 B = 2857.551612 C = 3231.633224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.061 3.939 10 H 0.039 0.961 11 C -0.093 4.093 12 C 0.041 3.959 13 N -0.535 5.535 14 C 0.049 3.951 15 C -0.067 4.067 16 S -0.308 6.308 17 C -0.044 4.044 18 C 0.070 3.930 19 H 0.058 0.942 20 H 0.260 0.740 21 H 0.048 0.952 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.031 0.969 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -8.999 1.777 9.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.040 3.960 10 H 0.057 0.943 11 C -0.132 4.132 12 C -0.086 4.086 13 N -0.260 5.260 14 C -0.082 4.082 15 C -0.216 4.216 16 S -0.081 6.081 17 C -0.192 4.192 18 C -0.039 4.039 19 H 0.076 0.924 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.432 -9.422 0.894 10.067 hybrid contribution -0.002 1.495 1.167 1.897 sum 3.430 -7.926 2.061 8.879 Atomic orbital electron populations 1.69986 1.05854 1.26527 1.49994 1.24954 0.94824 0.99025 0.94988 0.86581 0.80233 0.83884 0.77619 1.19737 1.20971 1.21043 1.21196 0.92794 0.90212 1.51341 0.92531 1.19360 0.92065 0.90180 0.94395 0.94283 1.22415 0.98702 0.93321 0.98721 1.22979 0.97642 0.95909 0.92117 1.64004 1.31675 1.12135 1.18159 1.22199 0.95617 0.94445 0.95917 1.23419 1.03295 0.98949 0.95901 1.86586 1.43052 1.28730 1.49685 1.23506 0.99673 0.95104 1.00903 1.22923 0.98402 0.92160 0.90453 0.92408 0.92996 0.93298 0.91481 0.91858 0.95024 0.93901 0.90665 0.89562 0.88462 0.89534 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 12.66 55.43 0.70 -24.09 16 2 C 0.06 1.73 5.17 -17.82 -0.09 1.64 16 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.69 8.32 -34.44 -0.29 -13.98 16 8 H 0.06 1.50 7.57 -52.48 -0.40 1.10 16 9 C 0.06 1.46 2.52 -90.41 -0.23 1.24 16 10 H 0.04 1.03 7.89 -51.93 -0.41 0.62 16 11 C -0.09 -2.11 5.91 -24.81 -0.15 -2.25 16 12 C 0.04 0.78 6.56 -2.43 -0.02 0.76 16 13 N -0.53 -9.96 4.79 -223.84 -1.07 -11.04 16 14 C 0.05 0.75 5.52 -4.07 -0.02 0.73 16 15 C -0.07 -0.96 6.65 37.45 0.25 -0.71 16 16 S -0.31 -5.20 22.38 -107.50 -2.41 -7.61 16 17 C -0.04 -0.82 5.96 37.11 0.22 -0.60 16 18 C 0.07 1.44 2.10 -66.68 -0.14 1.30 16 19 H 0.06 1.28 7.41 -51.93 -0.39 0.90 16 20 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 21 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.07 1.65 7.53 -51.93 -0.39 1.26 16 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.04 0.70 7.81 -51.93 -0.41 0.29 16 26 H 0.08 1.02 8.10 -51.93 -0.42 0.59 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 30 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 250.97 15.07 3.78 3.78 Total: -1.00 -27.18 250.97 -8.98 -36.15 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.50 Total: -1.17 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.46 Total: -11.88 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.37 Total: -35.12 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -2.41 Total: -7.61 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -27.18 -8.98 -36.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640132.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.747 kcal (2) G-P(sol) polarization free energy of solvation -27.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds