Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00084 * 2 1 4 4 H 1.48496 * 109.47357 * 269.99983 * 3 2 1 5 5 H 1.48506 * 109.47428 * 30.00052 * 3 2 1 6 6 H 1.48505 * 109.47322 * 149.99816 * 3 2 1 7 7 C 1.37876 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99543 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00108 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.35620 * 2.75971 * 9 7 2 11 11 C 1.54634 * 110.39791 * 125.21034 * 9 7 2 12 12 C 1.54978 * 104.98568 * 117.85967 * 11 9 7 13 13 N 1.47714 * 104.09323 * 336.28959 * 12 11 9 14 14 C 1.45902 * 113.71527 * 161.67651 * 13 12 11 15 15 C 1.53563 * 108.82876 * 167.71127 * 14 13 12 16 16 S 1.81803 * 109.07177 * 61.46264 * 15 14 13 17 17 C 1.82117 * 102.37423 * 310.27329 * 16 15 14 18 18 C 1.48178 * 104.28656 * 40.28851 * 13 12 11 19 19 H 1.09001 * 110.49637 * 78.60984 * 18 13 12 20 20 H 0.97005 * 119.99489 * 359.97438 * 1 2 3 21 21 H 1.09007 * 110.32793 * 236.65801 * 11 9 7 22 22 H 1.08997 * 110.33820 * 358.78017 * 11 9 7 23 23 H 1.09004 * 110.41322 * 217.68864 * 12 11 9 24 24 H 1.08997 * 110.61735 * 94.98932 * 12 11 9 25 25 H 1.09001 * 109.57988 * 47.90615 * 14 13 12 26 26 H 1.09006 * 109.57717 * 287.51313 * 14 13 12 27 27 H 1.08997 * 109.53983 * 301.58481 * 15 14 13 28 28 H 1.08997 * 109.61081 * 181.37793 * 15 14 13 29 29 H 1.08995 * 109.80505 * 170.48525 * 17 16 15 30 30 H 1.09001 * 109.80302 * 291.29926 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.1773 -2.3171 -0.0493 11 6 1.7047 -3.3835 -1.1851 12 6 2.3096 -4.6512 -0.5302 13 7 2.7064 -4.2038 0.8205 14 6 2.9095 -5.2973 1.7648 15 6 3.6061 -4.7471 3.0179 16 16 2.5366 -3.4968 3.7915 17 6 2.1081 -2.4245 2.3832 18 6 1.5991 -3.3189 1.2526 19 1 0.7469 -3.9100 1.5880 20 1 -0.4849 0.8401 0.0004 21 1 0.8504 -3.6507 -1.8072 22 1 2.4571 -2.8645 -1.7789 23 1 3.1805 -4.9903 -1.0911 24 1 1.5636 -5.4432 -0.4661 25 1 3.5340 -6.0642 1.3068 26 1 1.9457 -5.7252 2.0409 27 1 4.5553 -4.2911 2.7368 28 1 3.7862 -5.5589 3.7226 29 1 1.3285 -1.7220 2.6778 30 1 2.9916 -1.8783 2.0528 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259640152.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = 0.376609 kcal Electronic energy + Delta-G solvation = -12925.376031 eV Core-core repulsion = 10846.280550 eV Total energy + Delta-G solvation = -2079.095480 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.69770 -33.73613 -31.96688 -30.52596 -28.40935 -25.45677 -23.93254 -22.23118 -20.19745 -19.12903 -16.47141 -15.99344 -15.25870 -14.46549 -14.22255 -14.09849 -13.49282 -12.86735 -12.43911 -12.26826 -11.79030 -11.66210 -11.33746 -11.02503 -10.92741 -10.58332 -10.46002 -10.28248 -9.94839 -9.17422 -8.99030 -8.88996 -8.53873 -7.86450 -7.15530 -6.07460 -4.07625 2.39860 3.19380 3.28759 3.36445 3.40181 4.40044 4.49677 5.14769 5.24824 5.45647 5.50546 5.70077 5.81565 5.83939 5.99378 6.08350 6.16442 6.21780 6.45021 6.54042 6.85359 6.91206 7.01591 7.31382 7.43387 7.77673 7.79063 7.89828 8.42565 9.01990 9.54110 11.01648 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.033421 B = 0.012172 C = 0.010035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.605415 B = 2299.868489 C = 2789.536351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.496 4.496 8 H 0.059 0.941 9 C 0.040 3.960 10 H 0.074 0.926 11 C -0.118 4.118 12 C 0.045 3.955 13 N -0.525 5.525 14 C 0.049 3.951 15 C -0.063 4.063 16 S -0.336 6.336 17 C -0.015 4.015 18 C 0.072 3.928 19 H 0.036 0.964 20 H 0.262 0.738 21 H 0.045 0.955 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 -7.879 2.051 9.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.535 4.535 8 H 0.077 0.923 9 C 0.019 3.981 10 H 0.092 0.908 11 C -0.156 4.156 12 C -0.083 4.083 13 N -0.250 5.250 14 C -0.081 4.081 15 C -0.212 4.212 16 S -0.109 6.109 17 C -0.162 4.162 18 C -0.038 4.038 19 H 0.054 0.946 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.053 -7.409 3.167 9.019 hybrid contribution 0.107 0.291 -1.114 1.156 sum 4.160 -7.118 2.052 8.496 Atomic orbital electron populations 1.69885 1.05961 1.26764 1.50744 1.25006 0.94832 0.99237 0.94702 0.86650 0.80055 0.83537 0.78183 1.20676 1.21264 1.19682 1.20970 0.92980 0.89594 1.49907 0.92297 1.19636 0.99441 0.92386 0.86632 0.90762 1.22742 0.99044 0.94370 0.99493 1.22886 0.97953 0.97434 0.90013 1.63966 1.42809 1.16401 1.01833 1.22211 0.99177 0.93868 0.92847 1.23335 1.00316 0.98869 0.98655 1.86595 1.65097 1.35375 1.23837 1.23492 1.05407 0.96671 0.90633 1.23006 0.89705 0.93313 0.97770 0.94560 0.92814 0.93618 0.91506 0.91638 0.95437 0.90891 0.94268 0.89644 0.88795 0.87922 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 12.64 55.43 0.70 -24.24 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.50 -12.79 6.08 -34.44 -0.21 -13.00 16 8 H 0.06 1.56 7.56 -52.49 -0.40 1.16 16 9 C 0.04 0.95 3.26 -90.53 -0.30 0.65 16 10 H 0.07 1.96 6.98 -51.93 -0.36 1.60 16 11 C -0.12 -2.43 6.68 -24.83 -0.17 -2.59 16 12 C 0.04 0.80 6.57 -2.33 -0.02 0.78 16 13 N -0.52 -9.98 4.79 -223.72 -1.07 -11.05 16 14 C 0.05 0.79 5.52 -4.07 -0.02 0.77 16 15 C -0.06 -0.98 6.65 37.45 0.25 -0.73 16 16 S -0.34 -6.28 22.39 -107.50 -2.41 -8.68 16 17 C -0.01 -0.31 5.11 37.10 0.19 -0.12 16 18 C 0.07 1.52 2.49 -66.68 -0.17 1.36 16 19 H 0.04 0.79 7.83 -51.93 -0.41 0.38 16 20 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.07 1.42 7.71 -51.93 -0.40 1.02 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.03 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 26 H 0.04 0.64 7.80 -51.93 -0.41 0.24 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.10 2.34 8.14 -51.93 -0.42 1.92 16 30 H 0.10 2.33 6.88 -51.93 -0.36 1.97 16 LS Contribution 248.49 15.07 3.74 3.74 Total: -1.00 -26.73 248.49 -9.01 -35.74 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.42 Total: 0.02 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.53 Total: -11.28 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.37 Total: -35.29 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -2.41 Total: -8.68 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -26.73 -9.01 -35.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640152.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.115 kcal (2) G-P(sol) polarization free energy of solvation -26.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds