Wall clock time and date at job start Mon Mar 30 2020 02:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00084 * 2 1 4 4 H 1.48496 * 109.47357 * 269.99983 * 3 2 1 5 5 H 1.48506 * 109.47428 * 30.00052 * 3 2 1 6 6 H 1.48505 * 109.47322 * 149.99816 * 3 2 1 7 7 C 1.37876 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99543 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00108 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.35620 * 2.75971 * 9 7 2 11 11 C 1.54634 * 110.39791 * 125.21034 * 9 7 2 12 12 C 1.54978 * 104.98568 * 117.85967 * 11 9 7 13 13 N 1.47714 * 104.09323 * 336.28959 * 12 11 9 14 14 C 1.45902 * 113.71527 * 161.67651 * 13 12 11 15 15 C 1.53563 * 108.82876 * 167.71127 * 14 13 12 16 16 S 1.81803 * 109.07177 * 61.46264 * 15 14 13 17 17 C 1.82117 * 102.37423 * 310.27329 * 16 15 14 18 18 C 1.48178 * 104.28656 * 40.28851 * 13 12 11 19 19 H 1.09001 * 110.49637 * 78.60984 * 18 13 12 20 20 H 0.97005 * 119.99489 * 359.97438 * 1 2 3 21 21 H 1.09007 * 110.32793 * 236.65801 * 11 9 7 22 22 H 1.08997 * 110.33820 * 358.78017 * 11 9 7 23 23 H 1.09004 * 110.41322 * 217.68864 * 12 11 9 24 24 H 1.08997 * 110.61735 * 94.98932 * 12 11 9 25 25 H 1.09001 * 109.57988 * 47.90615 * 14 13 12 26 26 H 1.09006 * 109.57717 * 287.51313 * 14 13 12 27 27 H 1.08997 * 109.53983 * 301.58481 * 15 14 13 28 28 H 1.08997 * 109.61081 * 181.37793 * 15 14 13 29 29 H 1.08995 * 109.80505 * 170.48525 * 17 16 15 30 30 H 1.09001 * 109.80302 * 291.29926 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.1773 -2.3171 -0.0493 11 6 1.7047 -3.3835 -1.1851 12 6 2.3096 -4.6512 -0.5302 13 7 2.7064 -4.2038 0.8205 14 6 2.9095 -5.2973 1.7648 15 6 3.6061 -4.7471 3.0179 16 16 2.5366 -3.4968 3.7915 17 6 2.1081 -2.4245 2.3832 18 6 1.5991 -3.3189 1.2526 19 1 0.7469 -3.9100 1.5880 20 1 -0.4849 0.8401 0.0004 21 1 0.8504 -3.6507 -1.8072 22 1 2.4571 -2.8645 -1.7789 23 1 3.1805 -4.9903 -1.0911 24 1 1.5636 -5.4432 -0.4661 25 1 3.5340 -6.0642 1.3068 26 1 1.9457 -5.7252 2.0409 27 1 4.5553 -4.2911 2.7368 28 1 3.7862 -5.5589 3.7226 29 1 1.3285 -1.7220 2.6778 30 1 2.9916 -1.8783 2.0528 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259640152.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:39 Heat of formation + Delta-G solvation = -15.741555 kcal Electronic energy + Delta-G solvation = -12926.074967 eV Core-core repulsion = 10846.280550 eV Total energy + Delta-G solvation = -2079.794416 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27917 -35.46783 -33.66831 -32.20891 -29.97846 -27.25109 -25.73152 -23.61167 -21.73774 -20.90305 -18.39968 -17.54413 -16.79725 -16.31247 -15.81469 -15.63504 -14.94822 -14.36428 -14.17142 -13.76505 -13.50239 -13.42002 -12.86832 -12.75694 -12.66647 -12.35650 -12.05525 -11.99896 -11.55090 -10.97127 -10.82406 -10.63938 -10.46917 -9.34480 -8.66165 -8.11669 -6.15632 0.94932 1.40574 1.43460 1.52251 1.67811 2.43912 3.06466 3.17917 3.88947 4.07545 4.11011 4.30701 4.33576 4.42441 4.46017 4.67094 4.71313 4.76722 4.90073 4.93256 5.12813 5.21630 5.29595 5.60291 5.66342 5.76161 6.05215 6.34265 6.46549 6.97485 7.47639 8.97670 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.033421 B = 0.012172 C = 0.010035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.605415 B = 2299.868489 C = 2789.536351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.016 3.984 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.492 4.492 8 H 0.051 0.949 9 C 0.029 3.971 10 H 0.037 0.963 11 C -0.116 4.116 12 C 0.053 3.947 13 N -0.535 5.535 14 C 0.049 3.951 15 C -0.055 4.055 16 S -0.342 6.342 17 C -0.011 4.011 18 C 0.081 3.919 19 H 0.030 0.970 20 H 0.260 0.740 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.090 0.910 24 H 0.045 0.955 25 H 0.108 0.892 26 H 0.040 0.960 27 H 0.087 0.913 28 H 0.129 0.871 29 H 0.074 0.926 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 -9.652 2.237 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.182 4.182 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.069 0.931 9 C 0.008 3.992 10 H 0.056 0.944 11 C -0.155 4.155 12 C -0.074 4.074 13 N -0.261 5.261 14 C -0.081 4.081 15 C -0.203 4.203 16 S -0.115 6.115 17 C -0.159 4.159 18 C -0.029 4.029 19 H 0.048 0.952 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.063 0.937 25 H 0.126 0.874 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.148 0.852 29 H 0.093 0.907 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.688 -9.196 3.349 11.320 hybrid contribution -0.362 0.751 -1.149 1.420 sum 5.326 -8.445 2.200 10.223 Atomic orbital electron populations 1.70009 1.07215 1.27184 1.52573 1.25641 0.95455 1.02116 0.94987 0.85774 0.78924 0.80154 0.78198 1.20199 1.21336 1.19285 1.21117 0.92544 0.90736 1.48643 0.93113 1.19588 0.97062 0.92920 0.89615 0.94448 1.22617 0.99180 0.95328 0.98364 1.22870 0.99238 0.96066 0.89213 1.63930 1.41408 1.17772 1.02950 1.22329 0.99951 0.93445 0.92367 1.23512 0.99169 0.98453 0.99150 1.86577 1.66181 1.36053 1.22655 1.23143 1.03545 0.96974 0.92199 1.22681 0.90445 0.93408 0.96368 0.95226 0.93045 0.92979 0.92564 0.89124 0.93713 0.87386 0.94201 0.89415 0.85246 0.90716 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.54 12.64 21.45 0.27 -53.27 16 2 C 0.02 0.87 5.46 84.65 0.46 1.33 16 3 Si 0.94 43.37 29.54 68.60 2.03 45.40 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.49 -25.89 6.08 25.60 0.16 -25.74 16 8 H 0.05 2.71 7.56 -2.91 -0.02 2.69 16 9 C 0.03 1.41 3.26 -10.73 -0.04 1.38 16 10 H 0.04 2.06 6.98 -2.38 -0.02 2.04 16 11 C -0.12 -4.70 6.68 31.83 0.21 -4.49 16 12 C 0.05 1.75 6.57 86.82 0.57 2.32 16 13 N -0.54 -19.04 4.79 -861.73 -4.13 -23.17 16 14 C 0.05 1.36 5.52 86.68 0.48 1.84 16 15 C -0.05 -1.50 6.65 72.17 0.48 -1.02 16 16 S -0.34 -12.27 22.39 -56.49 -1.26 -13.54 16 17 C -0.01 -0.45 5.11 71.94 0.37 -0.09 16 18 C 0.08 3.43 2.49 44.88 0.11 3.55 16 19 H 0.03 1.29 7.83 -2.39 -0.02 1.27 16 20 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 21 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 22 H 0.06 2.36 7.71 -2.39 -0.02 2.34 16 23 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 24 H 0.04 1.33 8.09 -2.39 -0.02 1.31 16 25 H 0.11 2.36 8.10 -2.39 -0.02 2.34 16 26 H 0.04 1.14 7.80 -2.38 -0.02 1.13 16 27 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.07 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.08 3.80 6.88 -2.39 -0.02 3.78 16 Total: -1.00 -58.14 248.49 0.81 -57.32 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.10 Total: 8.17 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: 2.81 Total: -20.92 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -3.86 Total: -76.44 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -12.27 SS G_CDS: -1.26 Total: -13.54 kcal Total: -58.14 0.81 -57.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640152.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.583 kcal (2) G-P(sol) polarization free energy of solvation -58.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds