Wall clock time and date at job start Mon Mar 30 2020 02:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09003 * 109.96204 * 59.03668 * 9 7 2 11 11 C 1.55136 * 109.97951 * 297.74645 * 9 7 2 12 12 S 1.83461 * 102.20266 * 198.52226 * 11 9 7 13 13 C 1.83090 * 97.47727 * 22.90055 * 12 11 9 14 14 H 1.09000 * 110.40243 * 243.49030 * 13 12 11 15 15 C 1.53000 * 110.39968 * 121.07469 * 13 12 11 16 16 C 1.52999 * 117.49746 * 138.39345 * 15 13 12 17 17 C 1.52998 * 60.00185 * 252.50568 * 16 15 13 18 18 C 1.53859 * 109.97722 * 180.27895 * 9 7 2 19 19 H 1.09001 * 109.60708 * 46.69863 * 18 9 7 20 20 N 1.46901 * 109.60827 * 286.54423 * 18 9 7 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 110.85146 * 316.70116 * 11 9 7 23 23 H 1.08997 * 110.85686 * 80.34478 * 11 9 7 24 24 H 1.09006 * 115.55168 * 284.09977 * 15 13 12 25 25 H 1.08997 * 117.50254 * 0.02562 * 16 15 13 26 26 H 1.09000 * 117.49602 * 145.02071 * 16 15 13 27 27 H 1.08996 * 117.50632 * 252.51101 * 17 16 15 28 28 H 1.09001 * 117.49483 * 107.48133 * 17 16 15 29 29 H 1.00901 * 111.00673 * 61.44953 * 20 18 9 30 30 H 1.00898 * 110.99942 * 185.40474 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6048 -2.5596 -0.8703 11 6 0.4038 -2.6161 1.2996 12 16 0.0629 -4.4170 1.3784 13 6 1.4754 -4.9720 0.3541 14 1 1.1186 -5.4551 -0.5555 15 6 2.3696 -5.9247 1.1501 16 6 2.9106 -7.1580 0.4239 17 6 1.8107 -7.3112 1.4764 18 6 2.2407 -3.6772 0.0106 19 1 3.0152 -3.5011 0.7570 20 7 2.8593 -3.8073 -1.3155 21 1 -0.4850 0.8400 0.0004 22 1 0.9759 -2.2910 2.1686 23 1 -0.5228 -2.0493 1.2094 24 1 3.0142 -5.4544 1.8927 25 1 2.6299 -7.2904 -0.6209 26 1 3.9114 -7.4992 0.6887 27 1 2.0878 -7.7530 2.4335 28 1 0.8059 -7.5444 1.1240 29 1 3.3792 -2.9764 -1.5551 30 1 3.4460 -4.6268 -1.3619 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259698887.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:43 Heat of formation + Delta-G solvation = -6.144405 kcal Electronic energy + Delta-G solvation = -12488.207476 eV Core-core repulsion = 10408.829224 eV Total energy + Delta-G solvation = -2079.378253 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.19856 -37.21923 -34.58160 -31.92193 -29.54948 -27.23859 -24.43688 -23.21538 -21.71351 -21.04751 -18.48267 -17.67258 -16.72071 -16.46670 -16.22908 -15.49214 -15.09919 -14.69075 -14.21709 -13.55820 -13.35664 -13.01321 -12.71793 -12.70195 -12.41637 -12.32324 -12.31201 -11.68529 -11.59280 -11.09742 -10.80803 -10.62553 -10.40057 -9.48647 -8.59632 -8.16489 -6.30558 1.05928 1.42289 1.43122 1.51155 1.62924 2.40297 3.02667 3.13623 3.51447 3.83613 3.93531 4.13510 4.17577 4.36676 4.43201 4.58713 4.67194 4.80823 4.83533 4.90354 5.04509 5.26635 5.30130 5.34850 5.57779 5.78342 6.14710 6.36299 6.76163 6.79213 7.38001 8.90087 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.048405 B = 0.009268 C = 0.008258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.313815 B = 3020.579668 C = 3389.956432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.016 3.984 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.053 3.947 10 H 0.011 0.989 11 C -0.024 4.024 12 S -0.361 6.361 13 C 0.016 3.984 14 H 0.094 0.906 15 C -0.155 4.155 16 C -0.151 4.151 17 C -0.168 4.168 18 C 0.109 3.891 19 H 0.032 0.968 20 N -0.834 5.834 21 H 0.263 0.737 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.348 0.652 30 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -10.083 1.167 12.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.080 0.920 9 C 0.033 3.967 10 H 0.029 0.971 11 C -0.172 4.172 12 S -0.132 6.132 13 C -0.112 4.112 14 H 0.112 0.888 15 C -0.175 4.175 16 C -0.190 4.190 17 C -0.205 4.205 18 C -0.004 4.004 19 H 0.050 0.950 20 N -0.366 5.366 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.103 0.897 29 H 0.162 0.838 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.957 -10.619 1.457 11.809 hybrid contribution 1.613 2.001 0.054 2.571 sum 6.570 -8.618 1.511 10.942 Atomic orbital electron populations 1.70047 1.07419 1.27704 1.50296 1.25783 0.95620 1.02669 0.94308 0.85583 0.78288 0.78693 0.78932 1.19315 1.21322 1.19594 1.21215 0.92917 0.90691 1.51532 0.92039 1.19547 0.92505 0.93109 0.91568 0.97082 1.24236 1.03146 0.88011 1.01827 1.86977 1.42798 1.12297 1.71081 1.23214 0.93109 0.97281 0.97621 0.88794 1.22206 1.02457 0.89657 1.03185 1.23148 0.99285 0.98608 0.97984 1.22929 0.98674 0.97822 1.01125 1.22031 0.95880 0.92037 0.90432 0.95030 1.58565 1.41287 1.08746 1.28018 0.92763 0.92086 0.90292 0.87927 0.88152 0.86539 0.87320 0.89681 0.83775 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.21 11.93 21.45 0.26 -51.95 16 2 C 0.02 0.88 5.32 84.65 0.45 1.33 16 3 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.52 -27.40 8.08 25.60 0.21 -27.19 16 8 H 0.06 3.07 7.72 -2.91 -0.02 3.05 16 9 C 0.05 2.63 2.11 -10.52 -0.02 2.61 16 10 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 11 C -0.02 -1.16 6.14 72.71 0.45 -0.71 16 12 S -0.36 -15.18 22.63 -56.49 -1.28 -16.46 16 13 C 0.02 0.58 2.97 31.02 0.09 0.68 16 14 H 0.09 3.41 7.96 -2.39 -0.02 3.39 16 15 C -0.15 -4.36 5.07 -10.79 -0.05 -4.41 16 16 C -0.15 -3.15 10.19 30.59 0.31 -2.83 16 17 C -0.17 -3.99 10.18 30.59 0.31 -3.68 16 18 C 0.11 4.31 2.60 45.63 0.12 4.43 16 19 H 0.03 1.28 7.67 -2.39 -0.02 1.26 16 20 N -0.83 -28.94 9.23 -165.69 -1.53 -30.46 16 21 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 22 H 0.06 3.00 8.10 -2.39 -0.02 2.99 16 23 H 0.08 4.29 7.17 -2.39 -0.02 4.28 16 24 H 0.10 2.96 7.95 -2.38 -0.02 2.94 16 25 H 0.10 2.02 8.12 -2.39 -0.02 2.00 16 26 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.35 12.30 8.57 -89.69 -0.77 11.53 16 30 H 0.34 9.50 8.99 -89.70 -0.81 8.69 16 Total: -1.00 -58.21 260.45 0.90 -57.31 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.44 Total: 27.19 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 1.86 Total: -29.79 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.27 Total: -82.41 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: -15.18 SS G_CDS: -1.28 Total: -16.46 kcal Total: -58.21 0.90 -57.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698887.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.165 kcal (2) G-P(sol) polarization free energy of solvation -58.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds