Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48540 * 110.99768 * 2 1 4 4 C 1.54337 * 104.65332 * 200.84707 * 3 2 1 5 5 H 1.09006 * 112.88379 * 260.95817 * 4 3 2 6 6 S 1.83318 * 108.58544 * 135.59409 * 4 3 2 7 7 C 1.83948 * 96.04307 * 266.94128 * 6 4 3 8 8 C 1.55161 * 100.84322 * 324.71921 * 7 6 4 9 9 H 1.08997 * 109.63040 * 282.47897 * 8 7 6 10 10 C 1.50699 * 109.62813 * 162.24708 * 8 7 6 11 11 H 1.08000 * 119.99968 * 245.14449 * 10 8 7 12 12 C 1.37878 * 119.99925 * 65.13779 * 10 8 7 13 13 N 1.31513 * 119.99967 * 6.64411 * 12 10 8 14 14 Si 1.86807 * 119.99928 * 186.63738 * 12 10 8 15 15 H 1.48501 * 109.46876 * 94.94709 * 14 12 10 16 16 H 1.48498 * 109.46936 * 214.94649 * 14 12 10 17 17 H 1.48502 * 109.46974 * 334.94606 * 14 12 10 18 18 C 1.52862 * 108.81233 * 42.36567 * 8 7 6 19 19 H 1.08997 * 110.10022 * 205.49231 * 18 8 7 20 20 C 1.48536 * 111.00438 * 244.58936 * 2 1 3 21 21 H 1.09000 * 109.46362 * 175.41181 * 1 2 3 22 22 H 1.08998 * 109.47398 * 295.40785 * 1 2 3 23 23 H 1.08995 * 109.46864 * 55.41609 * 1 2 3 24 24 H 1.09001 * 110.39870 * 319.63432 * 3 2 1 25 25 H 1.08994 * 110.40191 * 82.04916 * 3 2 1 26 26 H 1.09000 * 111.14212 * 82.61052 * 7 6 4 27 27 H 1.08992 * 111.14601 * 206.82500 * 7 6 4 28 28 H 0.97004 * 119.99732 * 179.97438 * 13 12 10 29 29 H 1.09000 * 110.40174 * 40.36429 * 20 2 1 30 30 H 1.09000 * 110.40119 * 277.95296 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3868 0.0000 4 6 3.4439 1.2512 -0.5314 5 1 4.1895 1.2435 0.2637 6 16 3.7425 2.5813 -1.7570 7 6 3.2703 1.5926 -3.2346 8 6 3.7918 0.1896 -2.8258 9 1 4.8730 0.1480 -2.9580 10 6 3.1392 -0.8629 -3.6844 11 1 2.4764 -1.5893 -3.2379 12 6 3.3882 -0.8985 -5.0401 13 7 4.2929 -0.1004 -5.5636 14 14 2.4407 -2.0806 -6.1331 15 1 1.2724 -1.3798 -6.7241 16 1 3.3272 -2.5684 -7.2200 17 1 1.9692 -3.2331 -5.3239 18 6 3.4440 -0.0571 -1.3579 19 1 4.1428 -0.7712 -0.9223 20 6 2.0014 -0.5950 -1.2525 21 1 -0.3632 -1.0244 -0.0822 22 1 -0.3634 0.4409 0.9282 23 1 -0.3633 0.5833 -0.8460 24 1 1.4107 2.0204 -0.6617 25 1 2.0055 1.7921 1.0118 26 1 2.1893 1.5851 -3.3736 27 1 3.7773 1.9553 -4.1287 28 1 4.4683 -0.1257 -6.5173 29 1 1.4109 -0.2693 -2.1089 30 1 2.0056 -1.6829 -1.1845 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = -14.837976 kcal Electronic energy + Delta-G solvation = -12889.443178 eV Core-core repulsion = 10809.687944 eV Total energy + Delta-G solvation = -2079.755234 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29466 -36.28174 -33.83862 -31.35208 -29.34167 -27.18631 -26.47844 -23.55929 -22.23398 -20.42888 -18.18834 -17.78373 -16.94677 -16.34222 -15.77326 -15.40401 -15.19162 -14.65264 -13.95519 -13.66777 -13.39773 -13.14957 -12.77057 -12.75640 -12.59816 -12.42028 -12.23559 -12.08910 -11.55695 -11.44016 -11.08949 -10.58622 -10.48055 -9.48582 -8.63232 -8.17829 -6.27510 1.05631 1.39966 1.43932 1.52651 1.55887 2.40895 3.13818 3.23876 3.58940 3.71854 4.09364 4.35163 4.40809 4.46775 4.56462 4.59231 4.70084 4.72475 4.87223 4.97301 5.02535 5.08519 5.16295 5.37637 5.65115 5.76732 5.82520 6.08925 6.19793 6.80454 7.40470 8.90739 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.032654 B = 0.012463 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.273831 B = 2246.035082 C = 2850.344354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.524 5.524 3 C 0.052 3.948 4 C -0.025 4.025 5 H 0.124 0.876 6 S -0.366 6.366 7 C -0.013 4.013 8 C 0.051 3.949 9 H 0.011 0.989 10 C -0.523 4.523 11 H 0.073 0.927 12 C 0.018 3.982 13 N -0.918 5.918 14 Si 0.952 3.048 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.263 1.263 18 C -0.086 4.086 19 H 0.079 0.921 20 C 0.059 3.941 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.022 0.978 24 H 0.046 0.954 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.262 0.738 29 H 0.042 0.958 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 0.396 8.699 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.248 5.248 3 C -0.078 4.078 4 C -0.154 4.154 5 H 0.142 0.858 6 S -0.138 6.138 7 C -0.162 4.162 8 C 0.030 3.970 9 H 0.029 0.971 10 C -0.562 4.562 11 H 0.091 0.909 12 C -0.182 4.182 13 N -0.557 5.557 14 Si 0.778 3.222 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.187 1.187 18 C -0.106 4.106 19 H 0.097 0.903 20 C -0.069 4.069 21 H 0.094 0.906 22 H 0.105 0.895 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.447 1.322 9.147 10.727 hybrid contribution -0.720 -1.067 -1.989 2.369 sum -6.167 0.255 7.157 9.451 Atomic orbital electron populations 1.22547 0.86906 1.02523 1.01468 1.65468 1.09368 1.14734 1.35212 1.23424 0.92048 0.90507 1.01824 1.24500 1.00774 0.92848 0.97271 0.85793 1.87220 1.90461 1.26699 1.09433 1.24342 1.01098 0.96578 0.94133 1.19429 0.95883 0.91355 0.90310 0.97051 1.21478 1.28024 1.14112 0.92583 0.90917 1.25760 0.95403 0.97307 0.99768 1.70084 1.32547 1.40295 1.12737 0.85626 0.78500 0.79507 0.78614 1.20359 1.21398 1.18671 1.22309 0.97874 0.95390 0.95069 0.90285 1.23039 0.94224 0.99563 0.90097 0.90616 0.89535 0.95941 0.93543 0.87888 0.92003 0.90508 0.92870 0.93935 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 9.53 127.69 1.22 1.57 16 2 N -0.52 -15.98 5.66 -907.96 -5.14 -21.12 16 3 C 0.05 1.56 6.06 86.44 0.52 2.09 16 4 C -0.03 -0.87 4.40 31.65 0.14 -0.73 16 5 H 0.12 3.86 8.14 -2.38 -0.02 3.84 16 6 S -0.37 -14.78 22.26 -56.49 -1.26 -16.04 16 7 C -0.01 -0.63 6.29 72.72 0.46 -0.17 16 8 C 0.05 2.44 2.09 -10.84 -0.02 2.41 16 9 H 0.01 0.62 8.12 -2.39 -0.02 0.60 16 10 C -0.52 -26.50 7.43 25.60 0.19 -26.31 16 11 H 0.07 3.53 5.95 -2.91 -0.02 3.51 16 12 C 0.02 0.93 5.28 84.66 0.45 1.37 16 13 N -0.92 -51.45 12.41 21.45 0.27 -51.19 16 14 Si 0.95 41.50 29.54 68.60 2.03 43.53 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 16 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 18 C -0.09 -3.40 3.24 -9.79 -0.03 -3.43 16 19 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 20 C 0.06 2.12 4.35 86.44 0.38 2.50 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.02 0.58 7.97 -2.39 -0.02 0.57 16 24 H 0.05 1.51 7.41 -2.39 -0.02 1.49 16 25 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.06 2.89 8.02 -2.39 -0.02 2.87 16 27 H 0.08 4.00 7.52 -2.39 -0.02 3.98 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.04 1.71 6.62 -2.39 -0.02 1.69 16 30 H 0.08 2.77 7.87 -2.39 -0.02 2.75 16 Total: -1.00 -55.45 248.35 0.30 -55.15 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.11 Total: 10.37 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 3.30 Total: -20.70 kcal Atomic # 7 Polarization: -67.44 SS G_CDS: -4.87 Total: -72.31 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: -14.78 SS G_CDS: -1.26 Total: -16.04 kcal Total: -55.45 0.30 -55.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.315 kcal (2) G-P(sol) polarization free energy of solvation -55.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds