Wall clock time and date at job start Mon Mar 30 2020 02:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33058 * 126.00701 * 2 1 4 4 C 1.32814 * 108.65101 * 179.97438 * 3 2 1 5 5 C 1.39789 * 125.80109 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00308 * 180.02562 * 5 4 3 7 7 C 1.40345 * 120.00105 * 0.04343 * 5 4 3 8 8 N 1.30622 * 119.99818 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99898 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47171 * 90.00259 * 9 7 5 11 11 H 1.48499 * 109.47182 * 209.99889 * 9 7 5 12 12 H 1.48501 * 109.47402 * 330.00074 * 9 7 5 13 13 O 1.34955 * 108.39750 * 0.02562 * 4 3 2 14 14 C 1.34592 * 107.61097 * 0.02562 * 13 4 3 15 15 C 1.50699 * 126.32390 * 179.97438 * 14 13 4 16 16 C 1.52998 * 109.47421 * 245.87690 * 15 14 13 17 17 C 1.53002 * 109.46669 * 5.87439 * 15 14 13 18 18 F 1.39899 * 109.47090 * 125.87254 * 15 14 13 19 19 H 1.09001 * 109.46906 * 95.22067 * 1 2 3 20 20 H 1.08997 * 109.46881 * 215.21179 * 1 2 3 21 21 H 1.08996 * 109.47391 * 335.21892 * 1 2 3 22 22 H 0.97005 * 120.00016 * 179.97438 * 8 7 5 23 23 H 1.08994 * 109.47447 * 60.00046 * 16 15 14 24 24 H 1.08999 * 109.46777 * 179.97438 * 16 15 14 25 25 H 1.08999 * 109.46741 * 299.99249 * 16 15 14 26 26 H 1.09002 * 109.47434 * 56.38916 * 17 15 14 27 27 H 1.09004 * 109.47296 * 176.38336 * 17 15 14 28 28 H 1.09000 * 109.47197 * 296.38484 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2893 1.0764 0.0000 4 6 3.5570 0.6802 0.0006 5 6 4.6757 1.5184 0.0002 6 1 5.6688 1.0937 0.0003 7 6 4.5085 2.9118 0.0002 8 7 3.3075 3.4255 -0.0001 9 14 6.0034 4.0319 0.0005 10 1 6.3999 4.3287 -1.3996 11 1 5.6724 5.2990 0.7003 12 1 7.1265 3.3584 0.7007 13 8 3.5815 -0.6692 0.0004 14 6 2.3063 -1.0996 -0.0009 15 6 1.8488 -2.5355 -0.0021 16 6 1.1334 -2.8418 -1.3194 17 6 3.0612 -3.4570 0.1459 18 9 0.9700 -2.7458 1.0658 19 1 -0.3633 -0.0935 -1.0234 20 1 -0.3633 -0.8396 0.5925 21 1 -0.3634 0.9330 0.4307 22 1 3.1919 4.3886 0.0002 23 1 1.8181 -2.6779 -2.1514 24 1 0.8029 -3.8805 -1.3203 25 1 0.2696 -2.1853 -1.4248 26 1 3.6075 -3.1960 1.0523 27 1 2.7253 -4.4921 0.2096 28 1 3.7146 -3.3396 -0.7186 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259971582.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:42 Heat of formation + Delta-G solvation = -51.965873 kcal Electronic energy + Delta-G solvation = -14411.618349 eV Core-core repulsion = 11764.039953 eV Total energy + Delta-G solvation = -2647.578397 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.10961 -41.01872 -34.21154 -33.62989 -33.04412 -29.55025 -27.54125 -26.86869 -25.09542 -21.43569 -20.02931 -19.01020 -17.38780 -15.90924 -15.33322 -15.21467 -14.75089 -14.29393 -13.83580 -12.96465 -12.73255 -12.23418 -12.05464 -11.99359 -11.80742 -11.65003 -11.58121 -11.45044 -11.33905 -10.81088 -10.51219 -10.38105 -10.09356 -9.65490 -8.95052 -8.15167 -7.33912 -6.71578 -4.66917 2.83540 3.03396 3.07941 3.20264 3.81864 4.32354 4.43001 5.04987 5.21479 5.30038 5.38531 5.71778 5.83077 5.91285 6.02070 6.13703 6.24178 6.39961 6.44739 6.53588 6.60302 6.66975 6.92644 7.12943 7.70595 7.92473 8.12591 8.49999 8.74301 9.95126 10.21508 Molecular weight = 213.09amu Principal moments of inertia in cm(-1) A = 0.052255 B = 0.008964 C = 0.008072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.707160 B = 3122.872317 C = 3467.945764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.053 3.947 3 N -0.535 5.535 4 C 0.338 3.662 5 C -0.434 4.434 6 H 0.092 0.908 7 C 0.075 3.925 8 N -0.724 5.724 9 Si 0.928 3.072 10 H -0.267 1.267 11 H -0.274 1.274 12 H -0.260 1.260 13 O -0.238 6.238 14 C -0.246 4.246 15 C 0.230 3.770 16 C -0.161 4.161 17 C -0.162 4.162 18 F -0.211 7.211 19 H 0.058 0.942 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.280 0.720 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 -6.138 -1.566 6.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.075 4.075 3 N -0.265 5.265 4 C 0.155 3.845 5 C -0.469 4.469 6 H 0.111 0.889 7 C -0.150 4.150 8 N -0.348 5.348 9 Si 0.751 3.249 10 H -0.192 1.192 11 H -0.199 1.199 12 H -0.183 1.183 13 O -0.134 6.134 14 C -0.301 4.301 15 C 0.211 3.789 16 C -0.219 4.219 17 C -0.220 4.220 18 F -0.191 7.191 19 H 0.076 0.924 20 H 0.081 0.919 21 H 0.083 0.917 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.531 -5.315 -1.534 5.740 hybrid contribution 0.784 -0.137 0.091 0.801 sum -0.747 -5.453 -1.442 5.689 Atomic orbital electron populations 1.20052 0.89690 1.01999 1.00853 1.21527 0.96317 0.89644 1.00035 1.71410 0.99387 1.26177 1.29566 1.22261 0.93676 0.76254 0.92332 1.18168 0.91089 0.89352 1.48248 0.88945 1.25882 0.97638 0.98217 0.93302 1.69998 1.22510 1.13466 1.28816 0.86000 0.80714 0.78838 0.79349 1.19179 1.19889 1.18345 1.84340 1.27785 1.25045 1.76276 1.22052 0.83156 0.94646 1.30217 1.18327 0.87535 0.89124 0.83903 1.22330 1.01582 1.01537 0.96435 1.22230 0.97606 0.98250 1.03904 1.92816 1.71366 1.95491 1.59451 0.92368 0.91894 0.91694 0.90939 0.90895 0.91927 0.91300 0.91515 0.92150 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 9.13 36.01 0.33 -1.09 15 2 C 0.05 1.37 7.04 -82.88 -0.58 0.79 15 3 N -0.53 -15.75 9.43 -9.64 -0.09 -15.84 15 4 C 0.34 9.87 7.74 -16.55 -0.13 9.74 15 5 C -0.43 -11.98 9.45 -38.21 -0.36 -12.34 15 6 H 0.09 2.36 7.85 -52.48 -0.41 1.95 15 7 C 0.08 1.94 5.50 -17.27 -0.10 1.84 15 8 N -0.72 -19.72 11.88 55.57 0.66 -19.06 15 9 Si 0.93 18.56 29.56 -169.99 -5.03 13.53 15 10 H -0.27 -5.21 7.11 56.52 0.40 -4.81 15 11 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 12 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 13 O -0.24 -6.48 10.28 3.10 0.03 -6.45 15 14 C -0.25 -6.05 6.02 -35.13 -0.21 -6.26 15 15 C 0.23 4.47 1.37 -91.77 -0.13 4.35 15 16 C -0.16 -2.57 8.83 37.16 0.33 -2.24 15 17 C -0.16 -2.75 8.52 37.16 0.32 -2.43 15 18 F -0.21 -4.22 15.59 2.25 0.04 -4.18 15 19 H 0.06 1.07 7.75 -51.93 -0.40 0.67 15 20 H 0.06 1.19 6.92 -51.93 -0.36 0.83 15 21 H 0.06 1.34 8.14 -51.93 -0.42 0.91 15 22 H 0.28 6.80 8.29 -40.82 -0.34 6.46 15 23 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.07 1.10 6.66 -51.93 -0.35 0.75 15 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -31.27 248.00 -4.37 -35.65 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.19 Total: 0.26 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.53 Total: -7.65 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.57 Total: -34.90 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.03 Total: -6.45 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.04 Total: -4.18 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.27 -4.37 -35.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971582.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.319 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds