Wall clock time and date at job start Mon Mar 30 2020 02:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46803 * 2 1 4 4 F 1.39898 * 109.47214 * 239.99898 * 2 1 3 5 5 C 1.53000 * 109.47017 * 119.99459 * 2 1 3 6 6 N 1.46498 * 109.46878 * 184.99831 * 5 2 1 7 7 N 1.28721 * 125.87142 * 270.02478 * 6 5 2 8 8 N 1.28630 * 110.17691 * 179.97438 * 7 6 5 9 9 C 1.33767 * 108.88957 * 359.76970 * 8 7 6 10 10 C 1.35317 * 125.86870 * 90.00537 * 6 5 2 11 11 C 1.50698 * 126.90764 * 359.97438 * 10 6 5 12 12 C 1.50706 * 109.47294 * 264.99886 * 11 10 6 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 119.99848 * 16 14 12 19 19 H 1.48501 * 109.47057 * 239.99829 * 16 14 12 20 20 H 1.09010 * 109.46788 * 300.00215 * 1 2 3 21 21 H 1.08999 * 109.47452 * 60.00142 * 1 2 3 22 22 H 1.08996 * 109.47040 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47104 * 65.00026 * 5 2 1 24 24 H 1.08994 * 109.47160 * 305.00124 * 5 2 1 25 25 H 1.07996 * 126.75483 * 180.22362 * 9 8 7 26 26 H 1.09001 * 109.46665 * 145.00267 * 11 10 6 27 27 H 1.09000 * 109.47722 * 25.00599 * 11 10 6 28 28 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0400 -0.7211 1.2493 6 7 3.5000 -0.6178 1.3110 7 7 4.3374 -1.4491 0.7966 8 7 5.5430 -1.0664 1.0304 9 6 5.5076 0.0744 1.7281 10 6 4.2001 0.3683 1.9181 11 6 3.6372 1.5580 2.6520 12 6 3.5632 2.7368 1.7160 13 1 3.8907 2.6345 0.6919 14 6 3.0775 3.9458 2.1669 15 7 2.6792 4.0704 3.4141 16 14 2.9852 5.4067 1.0065 17 1 3.4908 5.0086 -0.3318 18 1 1.5751 5.8575 0.8893 19 1 3.8167 6.5156 1.5395 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7516 -1.7714 1.2058 24 1 1.6054 -0.2616 2.1369 25 1 6.3555 0.6469 2.0741 26 1 4.2829 1.8036 3.4952 27 1 2.6379 1.3205 3.0169 28 1 2.3371 4.9210 3.7313 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:33 Heat of formation + Delta-G solvation = 27.334643 kcal Electronic energy + Delta-G solvation = -14320.837632 eV Core-core repulsion = 11708.990715 eV Total energy + Delta-G solvation = -2611.846917 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.41890 -42.43829 -35.07954 -33.66837 -31.76579 -31.25900 -27.51443 -26.80622 -23.49890 -22.12351 -21.58514 -19.78980 -16.87780 -16.71276 -16.25857 -15.85336 -14.76621 -14.65339 -14.36629 -13.64075 -13.08424 -12.63379 -12.50667 -12.32371 -12.23678 -11.67572 -11.31257 -11.23642 -10.96393 -10.77933 -10.66343 -10.27534 -9.91084 -9.72931 -9.33193 -8.65783 -8.15404 -6.27893 -4.33902 2.37588 2.95270 3.16037 3.25536 3.29758 3.38240 4.26164 4.49059 4.66497 4.88885 4.99938 5.10502 5.24312 5.36820 5.50676 5.76044 5.94520 6.02499 6.08070 6.09712 6.41240 6.96662 7.14603 7.27003 7.38527 7.67329 8.00371 8.70792 9.26307 9.32532 10.81360 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.011862 C = 0.009416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.776178 B = 2359.967360 C = 2972.831768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 H 0.108 0.892 4 F -0.208 7.208 5 C 0.098 3.902 6 N -0.301 5.301 7 N -0.113 5.113 8 N -0.279 5.279 9 C -0.078 4.078 10 C 0.040 3.960 11 C 0.082 3.918 12 C -0.521 4.521 13 H 0.059 0.941 14 C 0.065 3.935 15 N -0.888 5.888 16 Si 0.895 3.105 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.280 1.280 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.067 0.933 23 H 0.105 0.895 24 H 0.121 0.879 25 H 0.182 0.818 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.165 -4.917 -2.241 7.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.033 3.967 3 H 0.126 0.874 4 F -0.189 7.189 5 C -0.025 4.025 6 N -0.095 5.095 7 N -0.091 5.091 8 N -0.146 5.146 9 C -0.234 4.234 10 C -0.091 4.091 11 C 0.043 3.957 12 C -0.560 4.560 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.722 3.278 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.206 1.206 20 H 0.101 0.899 21 H 0.092 0.908 22 H 0.086 0.914 23 H 0.124 0.876 24 H 0.139 0.861 25 H 0.199 0.801 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.055 -6.151 -2.947 8.490 hybrid contribution -0.270 1.901 0.018 1.920 sum -5.325 -4.249 -2.929 7.416 Atomic orbital electron populations 1.22289 0.92977 1.03440 1.04452 1.22018 0.95431 0.97984 0.81221 0.87367 1.92844 1.90363 1.83207 1.52514 1.22551 0.75248 1.03886 1.00809 1.47047 1.07970 1.17541 1.36895 1.78146 0.93961 1.17248 1.19760 1.74888 1.12593 1.12297 1.14842 1.23171 0.96644 0.97398 1.06203 1.23309 0.92262 0.93837 0.99702 1.17976 0.96542 0.86312 0.94874 1.21001 1.43520 0.94313 0.97118 0.92275 1.24962 0.94845 0.98734 0.95241 1.69944 1.42055 1.25773 1.14876 0.86472 0.77886 0.82333 0.81095 1.19562 1.20764 1.20613 0.89851 0.90773 0.91427 0.87640 0.86079 0.80114 0.93124 0.95069 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.65 37.16 0.36 -1.61 15 2 C 0.07 1.09 4.22 -26.73 -0.11 0.98 15 3 H 0.11 1.93 8.14 -51.93 -0.42 1.50 15 4 F -0.21 -3.74 17.07 2.25 0.04 -3.71 15 5 C 0.10 1.51 5.92 -4.04 -0.02 1.48 15 6 N -0.30 -6.00 3.32 -57.05 -0.19 -6.19 15 7 N -0.11 -2.45 13.17 60.35 0.79 -1.65 15 8 N -0.28 -6.20 12.41 30.23 0.38 -5.83 15 9 C -0.08 -1.66 11.99 -17.74 -0.21 -1.87 15 10 C 0.04 0.87 6.19 -82.09 -0.51 0.36 15 11 C 0.08 1.88 5.30 -29.03 -0.15 1.73 15 12 C -0.52 -13.17 9.09 -34.44 -0.31 -13.49 15 13 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 14 C 0.07 1.67 5.46 -17.82 -0.10 1.57 15 15 N -0.89 -23.75 13.29 55.43 0.74 -23.01 15 16 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 15 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 20 H 0.08 0.86 8.14 -51.92 -0.42 0.44 15 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 15 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 23 H 0.11 1.38 8.14 -51.93 -0.42 0.96 15 24 H 0.12 1.67 7.05 -51.93 -0.37 1.30 15 25 H 0.18 3.38 8.06 -52.49 -0.42 2.96 15 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.03 0.71 7.03 -51.93 -0.37 0.35 15 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 LS Contribution 254.96 15.07 3.84 3.84 Total: -1.00 -29.60 254.96 -3.72 -33.32 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -3.23 Total: -0.91 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.06 Total: -10.84 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 1.72 Total: -36.68 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.60 -3.72 -33.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.650 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds