Wall clock time and date at job start Mon Mar 30 2020 02:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46803 * 2 1 4 4 F 1.39898 * 109.47214 * 239.99898 * 2 1 3 5 5 C 1.53000 * 109.47017 * 119.99459 * 2 1 3 6 6 N 1.46498 * 109.46878 * 184.99831 * 5 2 1 7 7 N 1.28721 * 125.87142 * 270.02478 * 6 5 2 8 8 N 1.28630 * 110.17691 * 179.97438 * 7 6 5 9 9 C 1.33767 * 108.88957 * 359.76970 * 8 7 6 10 10 C 1.35317 * 125.86870 * 90.00537 * 6 5 2 11 11 C 1.50698 * 126.90764 * 359.97438 * 10 6 5 12 12 C 1.50706 * 109.47294 * 264.99886 * 11 10 6 13 13 H 1.07999 * 119.99515 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00176 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47216 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47389 * 119.99848 * 16 14 12 19 19 H 1.48501 * 109.47057 * 239.99829 * 16 14 12 20 20 H 1.09010 * 109.46788 * 300.00215 * 1 2 3 21 21 H 1.08999 * 109.47452 * 60.00142 * 1 2 3 22 22 H 1.08996 * 109.47040 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47104 * 65.00026 * 5 2 1 24 24 H 1.08994 * 109.47160 * 305.00124 * 5 2 1 25 25 H 1.07996 * 126.75483 * 180.22362 * 9 8 7 26 26 H 1.09001 * 109.46665 * 145.00267 * 11 10 6 27 27 H 1.09000 * 109.47722 * 25.00599 * 11 10 6 28 28 H 0.97004 * 119.99507 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0400 -0.7211 1.2493 6 7 3.5000 -0.6178 1.3110 7 7 4.3374 -1.4491 0.7966 8 7 5.5430 -1.0664 1.0304 9 6 5.5076 0.0744 1.7281 10 6 4.2001 0.3683 1.9181 11 6 3.6372 1.5580 2.6520 12 6 3.5632 2.7368 1.7160 13 1 3.8907 2.6345 0.6919 14 6 3.0775 3.9458 2.1669 15 7 2.6792 4.0704 3.4141 16 14 2.9852 5.4067 1.0065 17 1 3.4908 5.0086 -0.3318 18 1 1.5751 5.8575 0.8893 19 1 3.8167 6.5156 1.5395 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7516 -1.7714 1.2058 24 1 1.6054 -0.2616 2.1369 25 1 6.3555 0.6469 2.0741 26 1 4.2829 1.8036 3.4952 27 1 2.6379 1.3205 3.0169 28 1 2.3371 4.9210 3.7313 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042291.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:33 Heat of formation + Delta-G solvation = 9.185979 kcal Electronic energy + Delta-G solvation = -14321.624618 eV Core-core repulsion = 11708.990715 eV Total energy + Delta-G solvation = -2612.633902 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.75446 -44.08522 -36.52623 -35.52578 -33.18399 -32.96774 -29.29699 -28.11672 -25.38743 -23.53334 -23.06500 -21.37547 -18.62628 -18.39767 -17.56445 -17.38647 -16.61583 -15.99409 -15.80552 -15.15607 -14.83651 -14.34651 -13.85817 -13.58633 -13.36619 -13.14425 -13.07503 -12.71009 -12.56770 -12.51460 -12.04604 -11.92677 -11.68807 -11.62396 -10.87984 -10.62186 -9.88708 -8.24546 -6.36100 0.72107 1.39474 1.44477 1.49371 1.54420 1.68293 2.40089 3.08875 3.26894 3.46534 3.68681 3.77983 3.86549 4.19163 4.28644 4.36564 4.40609 4.74720 4.78656 5.06253 5.15989 5.23544 5.33981 5.45716 5.68161 5.75549 6.07949 6.71944 7.33291 7.58759 8.84655 Molecular weight = 213.10amu Principal moments of inertia in cm(-1) A = 0.025224 B = 0.011862 C = 0.009416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.776178 B = 2359.967360 C = 2972.831768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.069 3.931 3 H 0.079 0.921 4 F -0.225 7.225 5 C 0.086 3.914 6 N -0.292 5.292 7 N -0.121 5.121 8 N -0.299 5.299 9 C -0.080 4.080 10 C 0.027 3.973 11 C 0.095 3.905 12 C -0.528 4.528 13 H 0.046 0.954 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.952 3.048 17 H -0.275 1.275 18 H -0.272 1.272 19 H -0.278 1.278 20 H 0.095 0.905 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.134 0.866 24 H 0.138 0.862 25 H 0.200 0.800 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 -4.896 -2.492 8.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.097 0.903 4 F -0.206 7.206 5 C -0.034 4.034 6 N -0.086 5.086 7 N -0.100 5.100 8 N -0.165 5.165 9 C -0.237 4.237 10 C -0.106 4.106 11 C 0.056 3.944 12 C -0.567 4.567 13 H 0.064 0.936 14 C -0.174 4.174 15 N -0.554 5.554 16 Si 0.777 3.223 17 H -0.200 1.200 18 H -0.197 1.197 19 H -0.204 1.204 20 H 0.114 0.886 21 H 0.097 0.903 22 H 0.108 0.892 23 H 0.152 0.848 24 H 0.156 0.844 25 H 0.216 0.784 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.111 -6.144 -3.205 9.240 hybrid contribution 0.045 1.865 0.095 1.868 sum -6.066 -4.279 -3.111 8.049 Atomic orbital electron populations 1.22265 0.89368 1.05246 1.05325 1.22117 0.98140 0.96089 0.80489 0.90318 1.92813 1.90865 1.83370 1.53518 1.23032 0.72815 1.06003 1.01575 1.47358 1.09427 1.16416 1.35429 1.78070 0.94227 1.17698 1.19956 1.74871 1.13082 1.12887 1.15692 1.23564 0.97359 0.97197 1.05567 1.23109 0.92620 0.94151 1.00676 1.17703 0.96251 0.86330 0.94082 1.21117 1.43366 0.95391 0.96806 0.93604 1.25586 0.94530 1.00875 0.96441 1.70012 1.42737 1.26562 1.16096 0.85594 0.78210 0.79448 0.79020 1.19999 1.19741 1.20413 0.88626 0.90280 0.89168 0.84836 0.84373 0.78354 0.94586 0.94947 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.65 71.98 0.69 -2.59 15 2 C 0.07 2.04 4.22 30.60 0.13 2.17 15 3 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 4 F -0.22 -7.85 17.07 44.97 0.77 -7.08 15 5 C 0.09 2.50 5.92 86.38 0.51 3.02 15 6 N -0.29 -11.35 3.32 -334.41 -1.11 -12.46 15 7 N -0.12 -5.15 13.17 37.02 0.49 -4.67 15 8 N -0.30 -13.12 12.41 -58.26 -0.72 -13.84 15 9 C -0.08 -3.37 11.99 83.73 1.00 -2.36 15 10 C 0.03 1.14 6.19 41.35 0.26 1.39 15 11 C 0.10 4.37 5.30 29.10 0.15 4.52 15 12 C -0.53 -26.61 9.09 25.60 0.23 -26.38 15 13 H 0.05 2.40 7.74 -2.91 -0.02 2.37 15 14 C 0.03 1.33 5.46 84.65 0.46 1.79 15 15 N -0.92 -48.32 13.29 21.45 0.28 -48.03 15 16 Si 0.95 40.45 29.54 68.60 2.03 42.48 15 17 H -0.28 -11.78 7.11 99.48 0.71 -11.08 15 18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 19 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 20 H 0.09 1.70 8.14 -2.38 -0.02 1.68 15 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.09 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.13 3.12 8.14 -2.39 -0.02 3.10 15 24 H 0.14 3.52 7.05 -2.39 -0.02 3.51 15 25 H 0.20 7.31 8.06 -2.91 -0.02 7.28 15 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 27 H 0.03 1.46 7.03 -2.39 -0.02 1.44 15 28 H 0.27 13.39 8.31 -92.71 -0.77 12.62 15 Total: -1.00 -61.42 254.96 6.33 -55.09 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.15 Total: 6.95 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 3.44 Total: -18.45 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.06 Total: -79.00 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 0.77 Total: -7.08 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -61.42 6.33 -55.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042291.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.277 kcal (2) G-P(sol) polarization free energy of solvation -61.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds